ggKbase home page

S22_scaffold_12_curated

Search features with annotation key words

Displaying items 1-30 of 597 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_12_curated_1
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)
tufB2; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8K3_RHIRD
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
S22_scaffold_12_curated_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

499..1131
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=U4PV23_9RHIZ rbh
conserved membrane protein of unknown function rbh
Uncharacterized protein {ECO:0000313|EMBL:CDI08959.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_12_curated_3
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1409..1522
DNA (114bp) protein (38aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=Q8U568_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGL61929.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
S22_scaffold_12_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1615..1983)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AGT5_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS97012.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
conserved exported protein of unknown function
S22_scaffold_12_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2662..3111)
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=Q7CY63_AGRT5
Signal peptide protein {ECO:0000313|EMBL:KDR88232.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
S22_scaffold_12_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3446..3772
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BCD9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS97010.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
S22_scaffold_12_curated_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3847..5697)
DNA (1851bp) protein (617aa)
ABC transporter ATPase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003659F75 rbh
ABC transporter ATPase {ECO:0000313|EMBL:KJF73996.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter rbh
S22_scaffold_12_curated_trna_6
unknown

Not on your lists

comp(6012..6082)
DNA (71bp)
transferRNA Gly
S22_scaffold_12_curated_trna_5
unknown

Not on your lists

comp(6111..6192)
DNA (82bp)
transferRNA Tyr
S22_scaffold_12_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6403..7290
DNA (888bp) protein (296aa)
putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like (EC:2.1.1.-) rbh
tRNA/rRNA metyltransferase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8I4_RHIRD rbh
tRNA/rRNA metyltransferase {ECO:0000313|EMBL:EGP56630.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
S22_scaffold_12_curated_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7362..7754
DNA (393bp) protein (131aa)
Putative acyl-CoA thioester hydrolase (EC:3.1.2.-)
Acyl-CoA hydrolase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5DKF2_RHILU
Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:KGE83986.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_12_curated_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7760..8353
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CII7_RHILU rbh
Membrane protein {ECO:0000313|EMBL:KAJ34236.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
S22_scaffold_12_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8424..8825
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JJL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN94212.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
S22_scaffold_12_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8871..10235
DNA (1365bp) protein (455aa)
Sulfite reductase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8I0_RHIRD rbh
Sulfite reductase {ECO:0000313|EMBL:CDN94211.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cysJ; sulfite reductase rbh
S22_scaffold_12_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10310..10786)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8H9_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP56625.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
conserved exported protein of unknown function
S22_scaffold_12_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10799..11410)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8H8_RHIRD rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDN94209.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
S22_scaffold_12_curated_15
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11522..11950
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=Q7CY38_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGL61900.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
S22_scaffold_12_curated_16
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11968..12429)
DNA (462bp) protein (154aa)
Sortase-like acyltransferase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PV32_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:KGE83981.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Sortase-like acyltransferase
S22_scaffold_12_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12499..12852)
DNA (354bp) protein (118aa)
Transmembrane protein n=4 Tax=Rhizobium/Agrobacterium group RepID=U4Q5H4_9RHIZ
Transmembrane protein
Membrane protein {ECO:0000313|EMBL:KDR88220.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
S22_scaffold_12_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13094..16081
DNA (2988bp) protein (996aa)
UvrABC system protein B n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XXV4_RHIRD rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
uvrB; excinuclease ABC subunit B rbh
S22_scaffold_12_curated_19
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16260..16904)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003764210
Uncharacterized protein {ECO:0000313|EMBL:KJF73984.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
conserved exported protein of unknown function
S22_scaffold_12_curated_20
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17038..18006
DNA (969bp) protein (323aa)
esterase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035D9B75 rbh
esterase rbh
Esterase/lipase {ECO:0000313|EMBL:ADY64915.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
S22_scaffold_12_curated_21
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18044..18469)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003609047
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE83976.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_12_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18633..19088
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AGS1_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS96997.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
S22_scaffold_12_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19249..19860
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H713_RHIRD rbh
peptidase
Uncharacterized protein {ECO:0000313|EMBL:AHK01824.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
S22_scaffold_12_curated_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19868..20470)
DNA (603bp) protein (201aa)
DnaJ family molecular chaperone n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XXU8_RHIRD rbh
dnaJ; molecular chaperone DnaJ
DnaJ family molecular chaperone {ECO:0000313|EMBL:EHJ98463.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
S22_scaffold_12_curated_25
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20867..21220
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8G7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KJF66037.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
hypothetical protein
S22_scaffold_12_curated_trna_4
unknown

Not on your lists

comp(21284..21356)
DNA (73bp)
transferRNA Thr
S22_scaffold_12_curated_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21567..23306
DNA (1740bp) protein (580aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Rhizobium RepID=U4PV40_9RHIZ rbh
Diguanylate cyclase (GGDEF) domain-containing protein rbh
Diguanylate cyclase {ECO:0000313|EMBL:KDR88212.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
S22_scaffold_12_curated_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23338..24447)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8E9_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP56595.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Exonuclease III rbh
Displaying items 1-30 of 597 in total

View Taxonomy