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S22_scaffold_205_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_205_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..151
DNA (150bp) protein (50aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AWK8_RHIRD
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EMS95376.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
recQ; ATP-dependent DNA helicase
S22_scaffold_205_curated_2
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(325..1074)
DNA (750bp) protein (250aa)
Short-chain alcohol dehydrogenase-like protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q962_9RHIZ rbh
Dehydrogenase {ECO:0000313|EMBL:KJF70211.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Short-chain dehydrogenase/reductase SDR
S22_scaffold_205_curated_3
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1164..2102)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QCM2_9RHIZ rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
S22_scaffold_205_curated_4
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2197..2832
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R1F7_9RHIZ rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KJF67779.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
TetR family transcriptional regulator
S22_scaffold_205_curated_5
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3483..4427
DNA (945bp) protein (315aa)
Pirin domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B7T6_PARDP rbh
pirin rbh
Pirin domain protein {ECO:0000313|EMBL:ABL71580.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
S22_scaffold_205_curated_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4904..5869)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Paenibacillus sanguinis RepID=UPI00035DEFAA
alcohol dehydrogenase zinc-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
S22_scaffold_205_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5977..6744)
DNA (768bp) protein (256aa)
PREDICTED: salicylic acid-binding protein 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1855D rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABD88718.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
S22_scaffold_205_curated_8
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7113..7445)
DNA (333bp) protein (111aa)
Plasmid pSYMA complete sequence n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PID8_RHIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD44790.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
S22_scaffold_205_curated_9
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7640..8326)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000379D0A9 rbh
hypothetical protein rbh
Abortive infection protein {ECO:0000313|EMBL:EKF61669.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
S22_scaffold_205_curated_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8479..9804)
DNA (1326bp) protein (442aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P460_RHIML rbh
histidine kinase
S22_scaffold_205_curated_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9801..10475)
DNA (675bp) protein (225aa)
Two-component response regulator n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PI37_RHIML rbh
transcriptional regulator
Response regulator protein {ECO:0000313|EMBL:AJD44795.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
S22_scaffold_205_curated_12
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10629..12371)
DNA (1743bp) protein (581aa)
Potassium efflux system protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNS0_9PROT rbh
kefBC; Glutathione-regulated potassium-efflux system protein
Glutathione-regulated potassium-efflux system protein {ECO:0000313|EMBL:CDM62527.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
S22_scaffold_205_curated_13
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12494..13336)
DNA (843bp) protein (281aa)
Hydrolase, alpha/beta fold family, putative n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WB09_9CAUL rbh
Hydrolase, alpha/beta fold family, putative {ECO:0000313|EMBL:EDX81973.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
chloroperoxidase
S22_scaffold_205_curated_14
unknown

Not on your lists

comp(13465..13623)
DNA (159bp) protein (53aa)

This feature has no annotations

S22_scaffold_205_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13620..14510)
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium gallicum RepID=UPI0003760EA0 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KGD96814.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
LysR family transcriptional regulator protein
S22_scaffold_205_curated_16
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14542..15579)
DNA (1038bp) protein (346aa)
luciferase n=1 Tax=Rhizobium gallicum RepID=UPI000374F99C rbh
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:CDM62533.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
S22_scaffold_205_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15821..16474)
DNA (654bp) protein (218aa)
Isochorismatase hydrolase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AHU1_RHIRD rbh
Amidohydrolase {ECO:0000313|EMBL:KDR90181.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein rbh
S22_scaffold_205_curated_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16545..17588
DNA (1044bp) protein (348aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AC14_RHIFH rbh
LysR family transcriptional regulator rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:CCE98593.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
S22_scaffold_205_curated_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17758..18765)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQR2_PUSST rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:EZQ17308.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein rbh
S22_scaffold_205_curated_20
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18847..19458
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UG34_ADVKW
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AFK63972.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
S22_scaffold_205_curated_21
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19623..20009)
DNA (387bp) protein (129aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLT2_AGRRK
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDM62518.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
S22_scaffold_205_curated_22
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20136..20969
DNA (834bp) protein (278aa)
Enoyl-CoA hydratase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLT1_AGRRK rbh
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDM62519.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
S22_scaffold_205_curated_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21138..21878
DNA (741bp) protein (247aa)
Putative short-chain dehydrogenase/reductase protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQR0_PUSST rbh
short-chain dehydrogenase/reductase SDR family protein
Short-chain dehydrogenase/reductase SDR family protein {ECO:0000313|EMBL:AJC80071.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
S22_scaffold_205_curated_24
Pantoea stewartii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22463..22879
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E6C5F9
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KHN63823.1}; TaxID=66269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea stewartii.;"
S22_scaffold_205_curated_25
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23015..24442)
DNA (1428bp) protein (476aa)
signal peptide protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A8158 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJJ25149.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein rbh
S22_scaffold_205_curated_26
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24687..25595
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A0C89 rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDM62061.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
S22_scaffold_205_curated_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25736..26752)
DNA (1017bp) protein (339aa)
PREDICTED: methionine--tRNA ligase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10E8F rbh
metS; methionyl-tRNA synthetase rbh
Methionyl-tRNA synthetase {ECO:0000313|EMBL:KEA04575.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
S22_scaffold_205_curated_28
unknown

Not on your lists

26967..27152
DNA (186bp) protein (62aa)

This feature has no annotations

S22_scaffold_205_curated_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27943..29109
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQ29_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS70125.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_205_curated_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29461..31023)
DNA (1563bp) protein (521aa)
Transposase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4I7_9RHIZ rbh
Transposase {ECO:0000313|EMBL:EIM31129.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
transposase rbh
Displaying items 1-30 of 41 in total

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