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S22_scaffold_5_curated

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Displaying items 1-30 of 850 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_5_curated_1
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..273
DNA (273bp) protein (91aa)
PREDICTED: sulfate/thiosulfate import ATP-binding protein CysA-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C0FEB2
ABC transporter, nucleotide binding/ATPase protein (Sorbitol/mannitol) {ECO:0000313|EMBL:EGL64382.1}; Flags: Fragment;; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
sorbitol/mannitol ABC transporter ATPase
S22_scaffold_5_curated_2
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(709..1785)
DNA (1077bp) protein (359aa)
ABC transporter, nucleotide binding/ATPase protein (Sugar) n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JFC8_9RHIZ rbh
ABC transporter, nucleotide binding/ATPase protein (Sugar) {ECO:0000313|EMBL:EGL63398.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
sugar ABC transporter ATPase rbh
S22_scaffold_5_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1790..2620)
DNA (831bp) protein (277aa)
ABC transporter, membrane spanning protein (Sugar) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFB6_RHIRD rbh
ABC transporter, membrane spanning protein (Sugar) {ECO:0000313|EMBL:EGP55017.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
ABC transporter, membrane spanning protein (Sugar) rbh
S22_scaffold_5_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2624..3568)
DNA (945bp) protein (315aa)
ABC transporter, membrane spanning protein (Sugar) n=2 Tax=Rhizobium/Agrobacterium group RepID=U4PXX9_9RHIZ rbh
ABC transporter, membrane spanning protein (Sugar) rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:EMS94857.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
S22_scaffold_5_curated_5
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3719..4978)
DNA (1260bp) protein (420aa)
ABC transporter, substrate binding protein (Sugar) n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q879_9RHIZ rbh
ABC transporter, substrate binding protein (Sugar) rbh
ABC transporter, substrate binding protein (Sugar) {ECO:0000313|EMBL:CDI09961.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_5_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5017..6189)
DNA (1173bp) protein (391aa)
PREDICTED: cystathionine gamma-lyase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C132DA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDN96249.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
S22_scaffold_5_curated_7
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6186..6902)
DNA (717bp) protein (239aa)
Transcriptional regulator, GntR family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q1R0_9RHIZ rbh
Transcriptional regulator, GntR family rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDI09963.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_5_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7268..8293)
DNA (1026bp) protein (342aa)
metal ABC transporter substrate-binding protein n=1 Tax=Rhizobium radiobacter RepID=UPI000362B046 rbh
Metal ABC transporter substrate-binding protein {ECO:0000313|EMBL:EPR07548.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Putative ABC transporter (substrate-binding protein) rbh
S22_scaffold_5_curated_9
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8323..9189)
DNA (867bp) protein (289aa)
PREDICTED: uncharacterized membrane protein in ycf23-apcF intergenic region-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15786 rbh
ABC transporter permease rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:AAK90207.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
S22_scaffold_5_curated_10
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9182..10039)
DNA (858bp) protein (286aa)
ABC transporter, nucleotide binding/ATPase protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JFD7_9RHIZ rbh
ABC transporter, nucleotide binding/ATPase protein {ECO:0000313|EMBL:EGL63407.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
ABC transporter permease rbh
S22_scaffold_5_curated_11
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10453..11658
DNA (1206bp) protein (402aa)
PREDICTED: COBW domain-containing protein DDB_G0274527-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C110CA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK90205.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
S22_scaffold_5_curated_12
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11785..13002)
DNA (1218bp) protein (406aa)
PREDICTED: monocarboxylate transporter 11-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15FCF rbh
Transcription regulatory protein opdE {ECO:0000313|EMBL:KIV63206.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Arabinose efflux permease family protein rbh
S22_scaffold_5_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13185..14123
DNA (939bp) protein (313aa)
AraC family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGN0_RHIRD rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:EGP54885.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
AraC family transcriptional regulator rbh
S22_scaffold_5_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14207..14845
DNA (639bp) protein (213aa)
UbiE/COQ5 family protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGM9_RHIRD rbh
UbiE/COQ5 family protein {ECO:0000313|EMBL:EGP54884.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
methyltransferase
S22_scaffold_5_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14860..18135)
DNA (3276bp) protein (1092aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
DNA polymerase III subunit alpha (EC:2.7.7.7) rbh
Error-prone DNA polymerase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGM8_RHIRD rbh
S22_scaffold_5_curated_16
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18132..19550)
DNA (1419bp) protein (473aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JG17_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EGL63152.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
hypothetical protein rbh
S22_scaffold_5_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19564..20328)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGM6_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP54881.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein rbh
S22_scaffold_5_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20559..20915
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B8R2_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS95810.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
S22_scaffold_5_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20920..22206
DNA (1287bp) protein (429aa)
Hydroxypyruvate reductase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AXV5_RHIRD rbh
Hydroxypyruvate reductase {ECO:0000313|EMBL:EMS95811.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hydroxypyruvate reductase rbh
S22_scaffold_5_curated_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22315..22563
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XW62_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH05347.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
S22_scaffold_5_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22572..24776)
DNA (2205bp) protein (735aa)
diguanylate cyclase n=1 Tax=Rhizobium radiobacter RepID=UPI000360D92C rbh
Diguanylate cyclase {ECO:0000313|EMBL:KDR89322.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
diguanylate cyclase rbh
S22_scaffold_5_curated_22
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25013..25792)
DNA (780bp) protein (260aa)
Outer membrane lipoprotein n=2 Tax=Agrobacterium RepID=A9CGQ9_AGRT5 rbh
outer membrane lipoprotein rbh
Outer membrane lipoprotein {ECO:0000313|EMBL:AAK88953.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
S22_scaffold_5_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25826..26494)
DNA (669bp) protein (223aa)
D-and L-methionine ABC transporter, permease protein n=2 Tax=Rhizobium RepID=U4PYG5_9RHIZ rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:CDN95249.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
metI; D-and L-methionine ABC transporter, permease protein rbh
S22_scaffold_5_curated_24
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26484..27599)
DNA (1116bp) protein (372aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
D-and L-methionine ABC transporter, ATP binding protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PY75_9RHIZ rbh
metN; D-and L-methionine ABC transporter, ATP binding protein rbh
S22_scaffold_5_curated_25
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27895..28524)
DNA (630bp) protein (210aa)
Nitroreductase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CV28_AGRT5 rbh
nitroreductase rbh
Nitroreductase {ECO:0000313|EMBL:AAK88956.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
S22_scaffold_5_curated_26
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28826..30205)
DNA (1380bp) protein (460aa)
abg; Beta-glucosidase (EC:3.2.1.21) rbh
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
PREDICTED: beta-glucosidase 1A-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C126DE rbh
S22_scaffold_5_curated_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30769..32064)
DNA (1296bp) protein (432aa)
PREDICTED: monocarboxylate transporter 4-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13A10 rbh
MFS permease {ECO:0000313|EMBL:EGP55037.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
MFS permease rbh
S22_scaffold_5_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32154..32555)
DNA (402bp) protein (134aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00035D9DB4
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:EPR07561.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
S22_scaffold_5_curated_29
unknown

Not on your lists

comp(32608..32718)
DNA (111bp) protein (37aa)

This feature has no annotations

S22_scaffold_5_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33031..33600)
DNA (570bp) protein (190aa)
acetyltransferase n=1 Tax=Rhizobium radiobacter RepID=UPI00037A26C5 rbh
acetyltransferase rbh
Acetyltransferase {ECO:0000313|EMBL:EPR07562.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Displaying items 1-30 of 850 in total

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