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S22_scaffold_90_curated

Search features with annotation key words

Displaying items 1-30 of 132 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_90_curated_trna_1
unknown

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1340..1413
DNA (74bp)
transferRNA Met
S22_scaffold_90_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1487..2533)
DNA (1047bp) protein (349aa)
Transcriptional regulator, MarR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU85_PARL1 rbh
MarR family transcriptional regulator rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABS63468.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2765..3400
DNA (636bp) protein (212aa)
Methylthioribulose-1-phosphate dehydratase {ECO:0000255|HAMAP-Rule:MF_01677}; Short=MTRu-1-P dehydratase {ECO:0000255|HAMAP-Rule:MF_01677};; EC=4.2.1.109 {ECO:0000255|HAMAP-Rule:MF_01677};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Methylthioribulose-1-phosphate dehydratase n=2 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=MTNB_PARL1 rbh
class II aldolase/adducin family protein rbh
S22_scaffold_90_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3397..3951
DNA (555bp) protein (185aa)
Acireductone dioxygenase {ECO:0000255|HAMAP-Rule:MF_01682}; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000255|HAMAP-Rule:MF_01682}; Short=DHK-MTPene dioxygenase {ECO:0000255|HAMAP-Rule:MF_01682};; Acireductone dioxygenase (Fe(2+)-requiring) {ECO:0000255|HAMAP-Rule:MF_01682}; Short=ARD' {ECO:0000255|HAMAP-Rule:MF_01682};; Short=Fe-ARD {ECO:0000255|HAMAP-Rule:MF_01682};; EC=1.13.11.54 {ECO:0000255|HAMAP-Rule:MF_01682};; Acireductone dioxygenase (Ni(2+)-requiring) {ECO:0000255|HAMAP-Rule:MF_01682}; Short=ARD {ECO:0000255|HAMAP-Rule:MF_01682};; Short=Ni-ARD {ECO:0000255|HAMAP-Rule:MF_01682};; EC=1.13.11.53 {ECO:0000255|HAMAP-Rule:MF_01682};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Acireductone dioxygenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=MTND_PARL1 rbh
acireductone dioxygenase ARD rbh
S22_scaffold_90_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3948..4655
DNA (708bp) protein (236aa)
Enolase-phosphatase E1 {ECO:0000255|HAMAP-Rule:MF_01681}; EC=3.1.3.77 {ECO:0000255|HAMAP-Rule:MF_01681};; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000255|HAMAP-Rule:MF_01681}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Enolase-phosphatase E1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=MTNC_PARL1 rbh
2,3-diketo-5-methylthio-1-phosphopentane phosphatase rbh
S22_scaffold_90_curated_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4803..5141
DNA (339bp) protein (113aa)
Putative transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2ZYP1_9CAUL
Putative transcriptional regulator {ECO:0000313|EMBL:EJL24466.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
ArsR family transcriptional regulator
S22_scaffold_90_curated_6
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5138..5455
DNA (318bp) protein (106aa)
Rhodanese-related sulfurtransferases n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2Z9V9_9CAUL
Rhodanese-related sulfurtransferases {ECO:0000313|EMBL:GAM97516.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Rhodanese domain protein
S22_scaffold_90_curated_7
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5512..8769)
DNA (3258bp) protein (1086aa)
Transporter, AcrB/AcrD/AcrF family protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q4N5_METSZ rbh
acrB/AcrD/AcrF family transporter rbh
Transporter, AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:CCJ07689.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
S22_scaffold_90_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8766..9740)
DNA (975bp) protein (325aa)
Putative membrane fusion protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GR25_9PROT rbh
Efflux transporter, RND family, MFP subunit rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S22_scaffold_90_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9953..10153
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F1A1_9PROT
conserved hypothetical protein of unknown function
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S22_scaffold_90_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10200..11492
DNA (1293bp) protein (431aa)
Sulfide-quinone oxidoreductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1F3_9SPHN rbh
NADH dehydrogenase, FAD-containing subunit rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S22_scaffold_90_curated_11
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11504..12367)
DNA (864bp) protein (288aa)
Beta-lactamase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HF93_9SPHN rbh
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:KGD60448.1}; TaxID=1177181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax jadensis T9.;"
metallo-beta-lactamase family protein rbh
S22_scaffold_90_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12514..12750)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU89_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63472.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12859..13632
DNA (774bp) protein (258aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU90_PARL1 rbh
monofunctional biosynthetic peptidoglycan transglycosylase rbh
S22_scaffold_90_curated_14
unknown

Not on your lists

comp(13839..14327)
DNA (489bp) protein (163aa)

This feature has no annotations

S22_scaffold_90_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14338..15924)
DNA (1587bp) protein (529aa)
FAD dependent oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU92_PARL1 rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABS63475.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_16
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16034..16426)
DNA (393bp) protein (131aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036C8B0D
PilT protein domain-containing protein
S22_scaffold_90_curated_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16426..16665)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F884_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV12511.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
S22_scaffold_90_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16947..18374
DNA (1428bp) protein (476aa)
Aldehyde dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU93_PARL1 rbh
aldehyde dehydrogenase rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABS63476.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..19330)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Pantoea ananatis BRT175 RepID=U4W9Y0_PANAN
Uncharacterized protein {ECO:0000313|EMBL:KJZ59415.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
hypothetical protein
S22_scaffold_90_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19812..20120
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU95_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63478.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_21
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20306..21577
DNA (1272bp) protein (424aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ASA9_MARMM
peptidoglycan binding domain-containing protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ABI64828.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
S22_scaffold_90_curated_22
unknown

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comp(21578..22237)
DNA (660bp) protein (220aa)

This feature has no annotations

S22_scaffold_90_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22325..23626)
DNA (1302bp) protein (434aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU96_PARL1 rbh
major facilitator superfamily transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS63479.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24032..24883)
DNA (852bp) protein (284aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU97_PARL1 rbh
hypothetical protein rbh
S22_scaffold_90_curated_25

Not on your lists

comp(24880..26238)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PIC5_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH76215.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein rbh
S22_scaffold_90_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26246..27070)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU98_PARL1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS63481.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27268..29397
DNA (2130bp) protein (710aa)
TonB-dependent receptor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU99_PARL1 rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABS63482.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_28
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29394..30074)
DNA (681bp) protein (227aa)
Anti-ECFsigma factor, ChrR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUA0_PARL1 rbh
anti-ECF sigma factor ChrR rbh
Anti-ECFsigma factor, ChrR {ECO:0000313|EMBL:ABS63483.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S22_scaffold_90_curated_29
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30071..30748)
DNA (678bp) protein (226aa)
RNA polymerase sigma factor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUA1_PARL1 rbh
RNA polymerase sigma factor RpoE rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying items 1-30 of 132 in total

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