ggKbase home page

S22_scaffold_123_curated

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_123_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..175)
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Rhodospirillum rubrum F11 RepID=G2TF09_RHORU
hypothetical protein
IS298 transposase OrfA {ECO:0000313|EMBL:EYR79798.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
S22_scaffold_123_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(230..1039)
DNA (810bp) protein (270aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDR4_XANP2
NAD-binding 3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:ABS66157.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1397..2413)
DNA (1017bp) protein (339aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDR4_XANP2
NAD-binding 3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:ABS66157.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2416..3624)
DNA (1209bp) protein (403aa)
Beta-ketoadipyl CoA thiolase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDR3_XANP2
beta-ketoadipyl CoA thiolase
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:ABS66156.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_5
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3658..4809)
DNA (1152bp) protein (384aa)
acd3; acyl-CoA dehydrogenase (EC:1.3.99.3) rbh
acyl-CoA dehydrogenase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036A7E20 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KER67923.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
S22_scaffold_123_curated_6
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5092..7209
DNA (2118bp) protein (706aa)
6-carboxyhexanoate--CoA ligase n=1 Tax=Pseudomonas sp. 313 RepID=UPI000307BF91
6-carboxyhexanoate--CoA ligase {ECO:0000313|EMBL:KGD90483.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
pimeloyl-CoA synthetase rbh
S22_scaffold_123_curated_7
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7206..8147
DNA (942bp) protein (314aa)
Putative coenzyme A transferase, subunit A n=1 Tax=Citreicella sp. 357 RepID=I1AX07_9RHOB rbh
Putative coenzyme A transferase, subunit A {ECO:0000313|EMBL:EIE51028.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
coenzyme A transferase family protein
S22_scaffold_123_curated_8
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8144..8908
DNA (765bp) protein (255aa)
Coenzyme A transferase n=1 Tax=Citreicella sp. 357 RepID=I1AX08_9RHOB rbh
Coenzyme A transferase {ECO:0000313|EMBL:EIE51029.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
coenzyme A transferase family protein
S22_scaffold_123_curated_9

Not on your lists

comp(8922..9716)
DNA (795bp) protein (265aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZK6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN87811.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
enoyl-CoA hydratase/isomerase
S22_scaffold_123_curated_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9706..10620)
DNA (915bp) protein (305aa)
Transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C711_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AKF84645.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
pcaR; transcriptional regulator
S22_scaffold_123_curated_11
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10628..11425)
DNA (798bp) protein (266aa)
Transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZBL3_9PROT
Transcriptional regulator {ECO:0000313|EMBL:EME71830.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
transcriptional regulator
S22_scaffold_123_curated_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11553..12335)
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZA5_9BURK rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:EHL22279.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Enoyl-CoA hydratase
S22_scaffold_123_curated_13
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12566..13564
DNA (999bp) protein (333aa)
Immunogenic protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZQ5_9RHOB rbh
Immunogenic protein {ECO:0000313|EMBL:EAQ02536.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
TRAP transporter solute receptor, TAXI family
S22_scaffold_123_curated_14
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13597..15555
DNA (1959bp) protein (653aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Citreicella sp. 357 RepID=I1AX10_9RHOB rbh
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KEJ94396.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
TRAP transporter, 4TM/12TM fusion protein
S22_scaffold_123_curated_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15819..16937)
DNA (1119bp) protein (373aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035F5221 rbh
NADH:flavin oxidoreductase / NADH oxidase
NADH:flavin oxidoreductase / NADH oxidase {ECO:0000313|EMBL:AIB15915.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
S22_scaffold_123_curated_16
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16939..18087)
DNA (1149bp) protein (383aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1) rbh
Acyl-CoA dehydrogenase-like protein n=1 Tax=Citreicella sp. 357 RepID=I1AX14_9RHOB rbh
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:EIE51035.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
S22_scaffold_123_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18084..18569)
DNA (486bp) protein (162aa)
MaoC domain protein dehydratase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6D7_ALIDK
MaoC domain-containing protein dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:AEB84246.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
S22_scaffold_123_curated_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18592..19371)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000365FE33
5-methyltetrahydrofolate-homocysteine methyltransferase {ECO:0000313|EMBL:ERF86591.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Enoyl-CoA hydratase
S22_scaffold_123_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19634..20998
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6E7_ALIDK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEB84256.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
S22_scaffold_123_curated_20

Not on your lists

21002..21334
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DX26_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98378.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
S22_scaffold_123_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21337..22950
DNA (1614bp) protein (538aa)
methylcrotonoyl-CoA carboxylase (EC:6.4.1.4) rbh
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:AEB84254.1}; EC=6.4.1.4 {ECO:0000313|EMBL:AEB84254.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
methylcrotonoyl-CoA carboxylase n=1 Tax=Actinomadura atramentaria RepID=UPI0003754FBB rbh
S22_scaffold_123_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22953..24926
DNA (1974bp) protein (658aa)
methylcrotonoyl-CoA carboxylase, pyruvate carboxylase (EC:6.4.1.1 6.4.1.4) rbh
Methylcrotonoyl-CoA carboxylase, Pyruvate carboxylase {ECO:0000313|EMBL:AEB84253.1}; EC=6.4.1.1 {ECO:0000313|EMBL:AEB84253.1};; EC=6.4.1.4 {ECO:0000313|EMBL:AEB84253.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Methylcrotonoyl-CoA carboxylase, Pyruvate carboxylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6E4_ALIDK rbh
S22_scaffold_123_curated_23
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25108..25434)
DNA (327bp) protein (109aa)
transposase n=1 Tax=Xanthobacteraceae RepID=UPI00037391E4
transposase
Transposase {ECO:0000313|EMBL:AHD02249.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
S22_scaffold_123_curated_24
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26118..26663
DNA (546bp) protein (182aa)
Transcriptional regulator, TetR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE7_XANP2 rbh
TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS70243.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_25
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26660..27106
DNA (447bp) protein (149aa)
Cobalamin B12-binding domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE6_XANP2
cobalamin B12-binding domain-containing protein
Cobalamin B12-binding domain protein {ECO:0000313|EMBL:ABS70242.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_26
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27103..28782
DNA (1680bp) protein (560aa)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:ABS70241.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ABS70241.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE5_XANP2 rbh
methylmalonyl-CoA mutase, large subunit rbh
S22_scaffold_123_curated_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28792..29775
DNA (984bp) protein (328aa)
LAO/AO transport system ATPase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE4_XANP2 rbh
LAO/AO transport system ATPase rbh
LAO/AO transport system ATPase {ECO:0000313|EMBL:ABS70240.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_28
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29772..30233
DNA (462bp) protein (154aa)
Phenylacetic acid degradation protein PaaD n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE3_XANP2
phenylacetic acid degradation protein PaaD
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:ABS70239.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30272..31501
DNA (1230bp) protein (410aa)
Putative phenylacetate-CoA ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQE2_XANP2 rbh
phenylacetate-CoA ligase rbh
Putative phenylacetate-CoA ligase {ECO:0000313|EMBL:ABS70238.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_123_curated_30
unknown

Not on your lists

comp(31402..31629)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying items 1-30 of 99 in total

View Taxonomy