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S23_scaffold_424_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_424_curated_1
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..186
DNA (186bp) protein (62aa)
ATPase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037A2FF2
GTP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EHL05151.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
S23_scaffold_424_curated_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(381..1844)
DNA (1464bp) protein (488aa)
Aldehyde dehydrogenase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXK7_RUBXD
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABG03871.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
S23_scaffold_424_curated_3
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1940..3337)
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036EAEC8
Uncharacterized protein {ECO:0000313|EMBL:ENZ51724.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
major facilitator superfamily transporter
S23_scaffold_424_curated_4
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3385..4656)
DNA (1272bp) protein (424aa)
saccharopine dehydrogenase (NAD+, L-lysine forming) (EC:1.5.1.7)
Saccharopine dehydrogenase (NAD+, L-lysine forming) n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N766_9ARCH
Tax=RBG_13_Bathyarchaeota_52_12_curated
S23_scaffold_424_curated_5
unknown

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4676..4816
DNA (141bp) protein (47aa)

This feature has no annotations

S23_scaffold_424_curated_6
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4796..6226)
DNA (1431bp) protein (477aa)
PAS domain S-box n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K871_CLOPA
Sigma-54 dependent transcription regulator {ECO:0000313|EMBL:KAJ52007.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
PAS domain S-box domain-containing protein
S23_scaffold_424_curated_7
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6558..7700)
DNA (1143bp) protein (381aa)
Toxin-antitoxin system, toxin component, Fic family n=1 Tax=Desulfitobacterium hafniense DP7 RepID=G9XVY7_DESHA rbh
hypothetical protein rbh
Tax=BJP_IG2069_Clostridiales_42_11
S23_scaffold_424_curated_8
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7935..8477)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Geobacillus sp. WSUCF1 RepID=S7STA4_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KFX34136.1}; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus stearothermophilus).;"
hypothetical protein
S23_scaffold_424_curated_9
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8440..9591)
DNA (1152bp) protein (384aa)
Helix-turn-helix domain protein n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DL78_9FIRM
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEF94882.1}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
S23_scaffold_424_curated_10
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9915..12062
DNA (2148bp) protein (716aa)
O-antigen polymerase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKE0_9FIRM
polymerase
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_424_curated_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12075..12716
DNA (642bp) protein (214aa)
UDP-phosphate galactose phosphotransferase n=1 Tax=Bacillus sp. 123MFChir2 RepID=UPI000360461B
Uncharacterized protein {ECO:0000313|EMBL:EHL65817.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
sugar transferase
S23_scaffold_424_curated_12
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12716..13639
DNA (924bp) protein (308aa)
Nucleoside-diphosphate-sugar epimerases-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AZ02_SYNWW rbh
nucleoside-diphosphate-sugar epimerases-like protein rbh
Nucleoside-diphosphate-sugar epimerases-like protein {ECO:0000313|EMBL:ABI68052.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
S23_scaffold_424_curated_13
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13684..14952
DNA (1269bp) protein (423aa)
Glycosyl transferase group 1 n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BIU1_THEXL rbh
group 1 glycosyl transferase rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:AEF17826.1}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
S23_scaffold_424_curated_14
Paenibacillus sp. FSL H7-0357, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14964..16100)
DNA (1137bp) protein (379aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Paenibacillus sp. HW567 RepID=UPI0003625CB7 rbh
UDP-N-acetylglucosamine 2-epimerase
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:AIQ20130.1}; TaxID=1536774 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0357.;"
S23_scaffold_424_curated_15
RIFOXYB2_FULL_Tenericutes_36_25_curated, Tenericutes, Bacteria

Not on your lists

comp(16109..17221)
DNA (1113bp) protein (371aa)
capsular polysaccharide biosynthesis protein Cap8F n=1 Tax=Virgibacillus halodenitrificans RepID=UPI00030FD2B2 rbh
NAD-dependent epimerase/dehydratase
Tax=RIFOXYB2_FULL_Tenericutes_36_25_curated
S23_scaffold_424_curated_16
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17221..18243)
DNA (1023bp) protein (341aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:AIF53694.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AIF53694.1};; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
Polysaccharide biosynthesis protein CapD n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KI06_CLOPH rbh
S23_scaffold_424_curated_17
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18305..19081)
DNA (777bp) protein (259aa)
Imidazoleglycerol phosphate synthase, cyclase subunit n=1 Tax=Dorea sp. 5-2 RepID=R9NFS1_9FIRM rbh
Imidazoleglycerol phosphate synthase, cyclase subunit {ECO:0000313|EMBL:EOS78817.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
imidazole glycerol phosphate synthase subunit HisF
S23_scaffold_424_curated_18
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19083..19697)
DNA (615bp) protein (205aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Eubacterium sp. 14-2 RepID=S0JMZ8_9FIRM
S23_scaffold_424_curated_19
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19723..20856)
DNA (1134bp) protein (378aa)
N-acetyl sugar amidotransferase n=3 Tax=Dorea sp. 5-2 RepID=R9N6A7_9FIRM rbh
N-acetyl sugar amidotransferase {ECO:0000313|EMBL:EOS78819.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
N-acetyl sugar amidotransferase rbh
S23_scaffold_424_curated_20
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

Not on your lists

comp(20892..21644)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F67E8
type 12 methyltransferase
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
S23_scaffold_424_curated_21
Fusobacterium periodonticum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(21660..22877)
DNA (1218bp) protein (406aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EFE87075.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFE87075.1};; TaxID=546275 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium periodonticum ATCC 33693.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=D4CUC4_9FUSO rbh
hypothetical protein rbh
S23_scaffold_424_curated_22
Bacillus sp. 7_6_55CFAA_CT2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22879..23871)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Bacillus sp. 7_6_55CFAA_CT2 RepID=G9QCI0_9BACI
Uncharacterized protein {ECO:0000313|EMBL:EHL68900.1}; TaxID=665957 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus sp. 7_6_55CFAA_CT2.;"
hypothetical protein
S23_scaffold_424_curated_23
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23886..25211)
DNA (1326bp) protein (442aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22) rbh
UDP-glucose 6-dehydrogenase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D170_HALOH rbh
Tax=BJP_08E140C01_Clostridiales_46_19
S23_scaffold_424_curated_24
GWB2_OD1_ACD81_rel_46_69, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(25226..26302)
DNA (1077bp) protein (359aa)
glycosyl transferase id=15189804 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Glycosyl transferase {ECO:0000313|EMBL:KKU41604.1}; TaxID=1619009 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWB2_46_69.;"
glycosyl transferase
S23_scaffold_424_curated_25
RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26337..27278)
DNA (942bp) protein (314aa)
hypothetical protein id=45803 bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
hypothetical protein
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated
S23_scaffold_424_curated_26
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27269..28204)
DNA (936bp) protein (312aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI000375AEF0 rbh
Nucleoside-diphosphate-sugar epimerase
S23_scaffold_424_curated_27
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(28214..29299)
DNA (1086bp) protein (362aa)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47) rbh
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
GDP-mannose 4,6-dehydratase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HCQ0_ILYPC rbh
S23_scaffold_424_curated_28
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29312..30646)
DNA (1335bp) protein (445aa)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QJM2_9BACI rbh
Mannose-1-phosphate guanylyltransferase (GDP) {ECO:0000313|EMBL:KJR46150.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
mannose-1-phosphate guanylyltransferase rbh
Displaying 28 items

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