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S23_scaffold_666_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_666_curated_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..288
DNA (288bp) protein (96aa)
Transposase and inactivated derivatives, IS5 family n=1 Tax=uncultured bacterium A1Q1_fos_1134 RepID=L7VZR0_9BACT
Transposase {ECO:0000313|EMBL:KJA10367.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
transposase, IS4 family protein
S23_scaffold_666_curated_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(405..596)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C3D8_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL20865.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
S23_scaffold_666_curated_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(611..949)
DNA (339bp) protein (113aa)
Transcriptional regulator, XRE family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T835_ACIDE
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EER59358.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
predicted transcriptional regulators
S23_scaffold_666_curated_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(942..1307)
DNA (366bp) protein (122aa)
Addiction module toxin RelE n=7 Tax=Pseudomonas aeruginosa RepID=T5KNU6_PSEAI
addiction module toxin RelE
Addiction module toxin RelE {ECO:0000313|EMBL:ETD50869.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
S23_scaffold_666_curated_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1387..2577)
DNA (1191bp) protein (397aa)
Integrase family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T837_ACIDE rbh
Integrase family protein {ECO:0000313|EMBL:EER59360.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
phage integrase
S23_scaffold_666_curated_trna_1
unknown

Not on your lists

comp(2977..3048)
DNA (72bp)
transferRNA Thr
S23_scaffold_666_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3101..3610)
DNA (510bp) protein (170aa)
Stringent starvation protein B n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2G7_ACIDE
stringent starvation protein B
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3649..4260)
DNA (612bp) protein (204aa)
glutathione S-transferase domain-containing protein rbh
glutathione S-transferase domain-containing protein id=12549892 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:AFU44622.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S23_scaffold_666_curated_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4359..5117)
DNA (759bp) protein (253aa)
Cytochrome c1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W460_ACISJ rbh
cytochrome c1 rbh
Cytochrome c1 {ECO:0000313|EMBL:ABM41035.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
S23_scaffold_666_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5134..6546)
DNA (1413bp) protein (471aa)
cytochrome b/b6 domain-containing protein; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit id=12549890 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
cytochrome b/b6 domain-containing protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6558..7157)
DNA (600bp) protein (200aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2) rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDX7_ACIET rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7338..7769
DNA (432bp) protein (144aa)
large conductance mechanosensitive channel protein MscL n=1 Tax=Acidovorax radicis RepID=UPI0002377F49
mscL; large conductance mechanosensitive channel protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
S23_scaffold_666_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7776..8810)
DNA (1035bp) protein (345aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) rbh
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYK8_9BURK rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8914..9666)
DNA (753bp) protein (251aa)
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7W6_ALIDK rbh
NGG1p interacting factor 3 protein, NIF3 rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9738..10886
DNA (1149bp) protein (383aa)
HtrA2 peptidase (EC:3.4.21.108) id=12549884 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
HtrA2 peptidase (EC:3.4.21.108) rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10899..11687)
DNA (789bp) protein (263aa)
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC id=12549883 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Sec-independent protein translocase subunit TatC rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11741..12202)
DNA (462bp) protein (154aa)
tatB; sec-independent translocase id=12549882 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
tatB; sec-independent translocase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12223..12468)
DNA (246bp) protein (82aa)
Sec-independent protein translocase protein TatA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8X1_ACIDE
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
tatA; twin arginine translocase protein A
S23_scaffold_666_curated_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12549..12905)
DNA (357bp) protein (119aa)
histidine triad (HIT) protein id=12549880 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
histidine triad (HIT) protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12938..13969)
DNA (1032bp) protein (344aa)
patatin id=12549879 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
patatin rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13962..14348)
DNA (387bp) protein (129aa)
Putative transmembrane protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8X4_ACIDE
Putative transmembrane protein {ECO:0000313|EMBL:EER59078.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
transmembrane protein
S23_scaffold_666_curated_21
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14341..14742)
DNA (402bp) protein (134aa)
hisE; phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01020}; Short=PRA-PH {ECO:0000255|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000255|HAMAP-Rule:MF_01020};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Phosphoribosyl-ATP pyrophosphatase n=2 Tax=Acidovorax RepID=HIS2_ACISJ
S23_scaffold_666_curated_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14748..15137)
DNA (390bp) protein (130aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] id=12549876 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
phosphoribosyl-AMP cyclohydrolase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15190..16236)
DNA (1047bp) protein (349aa)
Peptidase S49 n=1 Tax=Acidovorax sp. KKS102 RepID=K0I833_9BURK rbh
peptidase S49 rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16238..16615)
DNA (378bp) protein (126aa)
Rieske (2Fe-2S) domain-containing protein id=12549874 bin=BDI species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
rieske (2fe-2S) iron-sulfur domain
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16636..17307)
DNA (672bp) protein (224aa)
HAD family hydrolase n=1 Tax=Acidovorax radicis RepID=UPI0002376690 rbh
HAD family hydrolase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17304..18266)
DNA (963bp) protein (321aa)
RluA family pseudouridine synthase (EC:4.2.1.70); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] id=12549872 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
pseudouridine synthase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_666_curated_27
unknown

Not on your lists

18567..18746
DNA (180bp) protein (60aa)

This feature has no annotations

S23_scaffold_666_curated_28
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18924..19874
DNA (951bp) protein (317aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2H4_ACIDE rbh
ribonuclease
Displaying 29 items

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