ggKbase home page

S27_scaffold_32_curated

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S27_scaffold_32_curated_1
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

1..402
DNA (402bp) protein (134aa)
Cytochrome c, 24 heme-binding sites id=4944468 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
omcH; cytochrome c, 24 heme-binding sites
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_32_curated_2
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

467..6289
DNA (5823bp) protein (1941aa)
Cytochrome c n=2 Tax=Geobacter metallireducens RepID=Q39Y60_GEOMG
Cytochrome c {ECO:0000313|EMBL:ABB30814.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
cytochrome c
S27_scaffold_32_curated_3

Not on your lists

6366..7769
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YUD3_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD40767.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ResB family protein
S27_scaffold_32_curated_4

Not on your lists

7766..8593
DNA (828bp) protein (276aa)
Cytochrome c assembly protein n=1 Tax=uncultured bacterium RepID=K1Z8G3_9BACT rbh
Cytochrome c assembly protein {ECO:0000313|EMBL:EKD40768.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cytochrome c assembly protein
S27_scaffold_32_curated_5
unknown

Not on your lists

8838..9080
DNA (243bp) protein (81aa)

This feature has no annotations

S27_scaffold_32_curated_6
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9214..9786
DNA (573bp) protein (191aa)
Transcriptional regulator, TetR family n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3U1_GEODF
TetR family transcriptional regulator
Helix-turn-helix transcriptional regulator, TetR family {ECO:0000313|EMBL:ACM19584.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S27_scaffold_32_curated_7
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9841..11043
DNA (1203bp) protein (401aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3U2_GEODF rbh
Multidrug resistance protein MexA {ECO:0000313|EMBL:GAM09015.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
RND family efflux transporter MFP subunit rbh
S27_scaffold_32_curated_8
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11095..14259
DNA (3165bp) protein (1055aa)
Efflux pump, RND family, inner membrane protein n=2 Tax=Geobacter metallireducens RepID=Q39XH2_GEOMG rbh
Efflux pump, RND family, inner membrane protein {ECO:0000313|EMBL:ABB31052.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
acrB; RND family efflux pump inner membrane protein rbh
S27_scaffold_32_curated_9
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14261..15682
DNA (1422bp) protein (474aa)
Efflux pump, RND family, outer membrane lipoprotein n=2 Tax=Geobacter metallireducens RepID=Q39XH1_GEOMG rbh
efflux pump, RND family, outer membrane lipoprotein rbh
Efflux pump, RND family, outer membrane lipoprotein {ECO:0000313|EMBL:ABB31053.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_32_curated_10
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15758..17557)
DNA (1800bp) protein (600aa)
Monovalent cation/proton antiporter family protein n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74GI5_GEOSL rbh
Sodium:proton exchanger {ECO:0000313|EMBL:KIE43926.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
monovalent cation/proton antiporter family protein rbh
S27_scaffold_32_curated_11
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17839..18525
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WIG8_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW14572.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
S27_scaffold_32_curated_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18558..19892)
DNA (1335bp) protein (445aa)
Rubredoxin reductase n=2 Tax=Geobacter sulfurreducens RepID=D7AGY1_GEOSK rbh
rubredoxin reductase rbh
Rubredoxin reductase {ECO:0000313|EMBL:AAR34173.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
S27_scaffold_32_curated_13
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20039..21640)
DNA (1602bp) protein (534aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
Hydroxylamine reductase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3EAB6_GEOLS rbh
hydroxylamine reductase rbh
S27_scaffold_32_curated_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21994..22377
DNA (384bp) protein (128aa)
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:AJE02239.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
DoxX family protein id=2132764 bin=GWB2_Pelobacter_53_15 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
S27_scaffold_32_curated_15
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22624..23595
DNA (972bp) protein (324aa)
Cyclic diguanylate phosphodiesterase n=2 Tax=Geobacter metallireducens RepID=Q39S42_GEOMG rbh
cyclic diguanylate phosphodiesterase rbh
Cyclic diguanylate phosphodiesterase {ECO:0000313|EMBL:ABB32932.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_32_curated_16
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23722..23997
DNA (276bp) protein (92aa)
Rhodanese-related sulfurtransferase n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P671_DESSD
Rhodanese-related sulfurtransferase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
S27_scaffold_32_curated_17
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24702..25340
DNA (639bp) protein (213aa)
NLP/P60 protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M1L6_GEODF
NLP/P60 protein
NLPC_P60 superfamily protein {ECO:0000313|EMBL:ACM21098.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S27_scaffold_32_curated_18
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25528..26205
DNA (678bp) protein (226aa)
OmpA/MotB domain protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3B0_GEODF rbh
Peptidoglycan-binding inner membrane lipoprotein YiaD, OmpA family {ECO:0000313|EMBL:ACM19520.2}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
OmpA/MotB domain-containing protein rbh
S27_scaffold_32_curated_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26400..27296
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G732_GEOUR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ27600.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_32_curated_20
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27445..29313
DNA (1869bp) protein (623aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRH8_SIDLE rbh
multi-sensor signal transduction histidine kinase rbh
S27_scaffold_32_curated_21
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29377..30117
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WIQ6_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW15737.1}; Flags: Precursor;; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
S27_scaffold_32_curated_trna_5
unknown

Not on your lists

comp(30319..30390)
DNA (72bp)
transferRNA Cys
S27_scaffold_32_curated_trna_4
unknown

Not on your lists

comp(30530..30603)
DNA (74bp)
transferRNA Arg
S27_scaffold_32_curated_22
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31698..33587)
DNA (1890bp) protein (630aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WJQ1_GEOS8 rbh
multi-sensor hybrid histidine kinase rbh
Tax=GWC2_Geobacteraceae_58_44_curated
S27_scaffold_32_curated_23
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34190..37105
DNA (2916bp) protein (972aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Sensor histidine kinase, PAS, GAF and GAF domain-containing n=2 Tax=Geobacter metallireducens RepID=Q39RF1_GEOMG
sensor histidine kinase, PAS, GAF and GAF domain-containing
S27_scaffold_32_curated_24
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37298..37948
DNA (651bp) protein (217aa)
NADPH-dependent FMN reductase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZT1_GEODF rbh
NADPH-dependent FMN reductase rbh
Iron-sulfur cluster-binding flavoprotein {ECO:0000313|EMBL:ACM18895.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S27_scaffold_32_curated_25
unknown

Not on your lists

37979..38083
DNA (105bp) protein (35aa)

This feature has no annotations

S27_scaffold_32_curated_26
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

39181..43743
DNA (4563bp) protein (1521aa)
Cytochrome C family protein id=4202866 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cytochrome C family protein
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_32_curated_27
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

43797..51281
DNA (7485bp) protein (2495aa)
Fibronectin, type III domain protein id=4202867 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
fibronectin I domain-containing protein
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_32_curated_trna_3
unknown

Not on your lists

comp(51387..51460)
DNA (74bp)
transferRNA Arg
Displaying items 1-30 of 171 in total

View Taxonomy