ggKbase home page

S28_scaffold_558_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_558_curated_1
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

651..872
DNA (222bp) protein (74aa)
Conserved protein n=2 Tax=Methanosarcina mazei RepID=Q8Q0P6_METMA
Uncharacterized protein {ECO:0000313|EMBL:AKB67767.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei LYC.;"
hypothetical protein
S28_scaffold_558_curated_2
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1754..1960
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TKZ8_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM06616.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
S28_scaffold_558_curated_3
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2556..3431
DNA (876bp) protein (292aa)
Integral membrane protein n=2 Tax=Methanosarcina mazei RepID=M1QEZ9_METMZ rbh
Integral membrane protein {ECO:0000313|EMBL:AKB78575.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
integral membrane protein rbh
S28_scaffold_558_curated_4
Methanosarcina sp. 2.H.A.1B.4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3816..5336
DNA (1521bp) protein (507aa)
AMP phosphorylase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=AMPPA_METAC rbh
Thymidine phosphorylase {ECO:0000313|EMBL:KKG10923.1}; TaxID=1483600 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.A.1B.4.;"
AMP phosphohydrolase
S28_scaffold_558_curated_5
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5538..6071
DNA (534bp) protein (178aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_00077}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=TRM56_METMA rbh
tRNA cytosine methylase Pos56
S28_scaffold_558_curated_6
unknown

Not on your lists

comp(6677..6982)
DNA (306bp) protein (102aa)

This feature has no annotations

S28_scaffold_558_curated_7
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7366..7875
DNA (510bp) protein (170aa)
aroK; shikimate kinase (EC:2.7.1.71) rbh
Shikimate kinase I {ECO:0000313|EMBL:AKB29535.1}; EC=2.7.1.71 {ECO:0000313|EMBL:AKB29535.1};; TaxID=1434120 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae T4/M.;"
Shikimate kinase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TL06_METAC rbh
S28_scaffold_558_curated_8
Methanosarcina sp. WH1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8287..8565
DNA (279bp) protein (93aa)
UPF0237 protein MM_0082 n=2 Tax=Methanosarcina mazei RepID=Y082_METMA
Phosphoserine phosphatase
UPF0237 protein MSWH1_2022 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1434102 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WH1.;"
S28_scaffold_558_curated_9
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8592..9953
DNA (1362bp) protein (454aa)
UPF0210 protein MM_0081 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Y081_METMA rbh
hypothetical protein rbh
UPF0210 protein MSMAL_1232 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei LYC.;"
S28_scaffold_558_curated_10
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10144..10914)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQ63_METAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKI00125.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
hypothetical protein rbh
Displaying 10 items

View Taxonomy