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S28_scaffold_408_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_408_curated_1
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..821)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AAZ6_9PROT
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KIL98431.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
sensory box/GGDEF domain/EAL domain-containing protein
S28_scaffold_408_curated_2
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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906..1622
DNA (717bp) protein (239aa)
id=3031373 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_408_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(1626..2624)
DNA (999bp) protein (333aa)
DNA polymerase III, delta subunit id=3031371 bin=GWB1_Spirochaetes_59_5 species=Treponema vincentii genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
DNA polymerase III subunit delta
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_4
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(2635..3234)
DNA (600bp) protein (200aa)
LexA repressor id=1287733 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
SOS-response transcriptional repressor, LexA
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(3231..4601)
DNA (1371bp) protein (457aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=3031367 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Fis family transcriptional regulator rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_6
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(4614..6407)
DNA (1794bp) protein (598aa)
Integral membrane sensor signal transduction histidine kinase id=3031364 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
integral membrane sensor signal transduction histidine kinase rbh
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_408_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(6404..6670)
DNA (267bp) protein (89aa)
Phosphotransferase system, phosphocarrier protein HPr id=3031361 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
phosphotransferase system, phosphocarrier protein HPr
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(6707..7696)
DNA (990bp) protein (330aa)
HPr kinase/phosphorylase id=3031356 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
HPr kinase rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(7823..8113)
DNA (291bp) protein (97aa)
Ribosomal subunit interface protein id=3927250 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
ribosomal subunit interface protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_10
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8251..9624)
DNA (1374bp) protein (458aa)
RNA polymerase, sigma 54 subunit, RpoN id=3927252 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
RNA polymerase sigma-54 subunit RpoN rbh
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_408_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

10017..10559
DNA (543bp) protein (181aa)
Protein GrpE id=4015002 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
protein grpE
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_12
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

10652..12532
DNA (1881bp) protein (627aa)
Chaperone protein DnaK id=3927257 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
chaperone protein dnaK rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_13
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

12536..13675
DNA (1140bp) protein (380aa)
Chaperone protein DnaJ id=1287652 bin=GWE1_Spirochaete_60_18 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
chaperone protein dnaJ rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_408_curated_14
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

13795..13941
DNA (147bp) protein (49aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Displaying 14 items

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