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S28_scaffold_259_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_259_curated_1
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

3..578
DNA (576bp) protein (192aa)
yqjD; putative propionyl-CoA carboxylase beta chain (EC:6.4.1.3)
Acetyl-CoA carboxylase subunit alpha id=3582143 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_2
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

589..915
DNA (327bp) protein (109aa)
id=2427229 bin=GWF1_Spirochaetes_60_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

986..1363
DNA (378bp) protein (126aa)
Biotin carboxyl carrier protein (EC:4.1.1.41)
Biotin carboxyl carrier protein id=2427223 bin=GWF1_Spirochaetes_60_12 species=unknown genus=Coprococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_4
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

comp(1929..2312)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D6E3_9FIRM
Tax=GWC2_Clostridiales_40_7_curated
S28_scaffold_259_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(2695..3174)
DNA (480bp) protein (160aa)
Thioesterase superfamily protein id=1325780 bin=GWE1_Spirochaete_60_18 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
phenylacetic acid degradation-related protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_6
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(3418..4242)
DNA (825bp) protein (275aa)
HflC protein id=3582138 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
HflC protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(4239..5201)
DNA (963bp) protein (321aa)
HflK protein id=3582137 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
HflK protein rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(5220..6197)
DNA (978bp) protein (326aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase, RluA family id=1275917 bin=GWE1_Spirochaete_60_18 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

6306..6788
DNA (483bp) protein (161aa)
Acid phosphatase/vanadium-dependent haloperoxidase related protein id=3582135 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
acid phosphatase/vanadium-dependent haloperoxidase related protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_10
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

6795..8276
DNA (1482bp) protein (494aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

8273..9568
DNA (1296bp) protein (432aa)
Soluble ligand binding domain protein id=3582133 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Soluble ligand binding domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_12
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

9565..10656
DNA (1092bp) protein (364aa)
Electron transport complex, RnfABCDGE type, D subunit id=3582132 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
RnfABCDGE type electron transport complex subunit D
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_13
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

10653..11147
DNA (495bp) protein (165aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_14
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

11137..11724
DNA (588bp) protein (196aa)
id=3582028 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_15
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

11721..12296
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit id=3582025 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
RnfABCDGE type electron transport complex subunit A
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_16
unknown

Not on your lists

comp(12969..13238)
DNA (270bp) protein (90aa)

This feature has no annotations

S28_scaffold_259_curated_17
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

14323..15789
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8) rbh
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F0L5_SPICH rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_18
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

15786..16649
DNA (864bp) protein (288aa)
Putative uncharacterized protein id=3908873 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_19
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

16662..17234
DNA (573bp) protein (191aa)
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=2427204 bin=GWF1_Spirochaetes_60_12 species=Treponema phagedenis genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_20
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

17185..18066
DNA (882bp) protein (294aa)
Oxidoreductase, short chain dehydrogenase/reductase family id=3908871 bin=GWB1_Spirochaetes_59_5 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
short chain dehydrogenase
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_21
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

18071..19099
DNA (1029bp) protein (343aa)
aldose 1-epimerase (EC:5.1.3.3) rbh
Aldose 1-epimerase (Mutarotase) id=3908869 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_22
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(19166..20500)
DNA (1335bp) protein (445aa)
Putative uncharacterized protein id=3908867 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_23
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

20583..20885
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=1276029 bin=GWE1_Spirochaete_60_18 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
CRISPR-associated protein Cas2
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_24
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

20951..22036
DNA (1086bp) protein (362aa)
Peptide chain release factor 2 id=2537600 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
peptide chain release factor 2 rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_25
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

22044..23462
DNA (1419bp) protein (473aa)
PEGA domain protein id=3864519 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_26
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

23472..24341
DNA (870bp) protein (290aa)
cell division protein FtsY n=1 Tax=Treponema bryantii RepID=UPI0003B6574A rbh
signal recognition particle-docking protein FtsY rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_259_curated_27
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

24338..24940
DNA (603bp) protein (201aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Displaying 27 items

View Taxonomy