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S28_scaffold_218_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_218_curated_1
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(1..900)
DNA (900bp) protein (300aa)
Permease YjgP/YjgQ family protein id=3718989 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
putative permease, YjgP/YjgQ family
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_218_curated_2
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(897..2168)
DNA (1272bp) protein (424aa)
putative permease, YjgP/YjgQ family protein id=3718991 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
permease YjgP/YjgQ family protein rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(2181..2621)
DNA (441bp) protein (147aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLL6_TREBD
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_4
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(2614..3939)
DNA (1326bp) protein (442aa)
processing peptidase (EC:3.4.24.64)
Processing peptidase id=2649751 bin=GWB1_Spirochaetes_59_5 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(4038..6134)
DNA (2097bp) protein (699aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8) rbh
Polyribonucleotide nucleotidyltransferase id=2649747 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_6
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


comp(6285..6554)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=2649741 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
rpsO; 30S ribosomal protein S15
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(6581..7378)
DNA (798bp) protein (266aa)
Putative riboflavin biosynthesis protein RibF id=2649736 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
putative riboflavin biosynthesis protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8283..8594)
DNA (312bp) protein (104aa)
Ribosome-binding factor A id=2649729 bin=GWB1_Spirochaetes_59_5 species=Treponema sp. JC4 genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
rbfA; ribosome-binding factor A
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_9
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(8611..11640)
DNA (3030bp) protein (1010aa)
Translation initiation factor IF-2 id=2538872 bin=GWB1_Spirochaetales_60_80 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
translation initiation factor IF-2 rbh
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_218_curated_10
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(11650..13107)
DNA (1458bp) protein (486aa)
NusA antitermination factor id=2649717 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
NusA antitermination factor rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(13110..13559)
DNA (450bp) protein (150aa)
Ribosome maturation factor RimP id=2649714 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_12
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(13689..14429)
DNA (741bp) protein (247aa)
Putative uncharacterized protein id=1300083 bin=GWE1_Spirochaete_60_18 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_13
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(14451..17075)
DNA (2625bp) protein (875aa)
DNA mismatch repair protein MutS id=2649706 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
DNA mismatch repair protein mutS rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_14
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

17127..17624
DNA (498bp) protein (166aa)
Anti-sigma-factor antagonist id=2427342 bin=GWF1_Spirochaetes_60_12 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
anti-sigma-factor antagonist
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_15
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(17685..18224)
DNA (540bp) protein (180aa)
Outer membrane chaperone Skp (OmpH) id=2538897 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
outer membrane chaperone Skp
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_16
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(18282..20828)
DNA (2547bp) protein (849aa)
Outer membrane protein assembly complex, YaeT protein id=2538902 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
outer membrane protein assembly complex, YaeT protein rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_17
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(20843..25240)
DNA (4398bp) protein (1466aa)
Putative uncharacterized protein id=3404345 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
hypothetical protein rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_218_curated_18
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

25316..25666
DNA (351bp) protein (117aa)
tmk; thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=3404348 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
Displaying 18 items

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