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S28_scaffold_365_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_365_curated_1
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

3..527
DNA (525bp) protein (175aa)
Maf-like protein TDE_2348 id=2562571 bin=GWB1_Spirochaetes_59_5 species=Treponema vincentii genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
septum formation protein Maf
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_2
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


662..1534
DNA (873bp) protein (291aa)
30S ribosomal protein S2 id=2562567 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
30S ribosomal protein S2 rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

1659..2510
DNA (852bp) protein (284aa)
Elongation factor Ts id=2562557 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Elongation factor Ts rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_4
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

2577..3128
DNA (552bp) protein (184aa)
Ribosome-recycling factor id=2562542 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
ribosome-recycling factor
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

3131..3853
DNA (723bp) protein (241aa)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31) rbh
Isoprenyl transferase id=2562537 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_6
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

3850..4719
DNA (870bp) protein (290aa)
Phosphatidate cytidylyltransferase id=2562532 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
phosphatidate cytidylyltransferase
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

4754..5890
DNA (1137bp) protein (379aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267) rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F3I9_SPICH rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

5890..7248
DNA (1359bp) protein (453aa)
Membrane-associated zinc metalloprotease id=2562431 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
membrane-associated zinc metalloprotease rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

7287..7901
DNA (615bp) protein (205aa)
Putative uncharacterized protein id=2562425 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_10
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(7948..8244)
DNA (297bp) protein (99aa)
Putative uncharacterized protein id=2562421 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Late competence development protein ComFB
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8277..9623)
DNA (1347bp) protein (449aa)
Replicative DNA helicase id=2562412 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
replicative DNA helicase rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_12
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


comp(9633..10232)
DNA (600bp) protein (200aa)
50S ribosomal protein L9 id=2562407 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
rplI; 50S ribosomal protein L9
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_13
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10229..11128)
DNA (900bp) protein (300aa)
id=2427135 bin=GWF1_Spirochaetes_60_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_14
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


comp(11289..11600)
DNA (312bp) protein (104aa)
30S ribosomal protein S18 id=2427136 bin=GWF1_Spirochaetes_60_12 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
30S ribosomal protein S18
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_365_curated_15
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(11646..12143)
DNA (498bp) protein (166aa)
Single-stranded DNA-binding protein id=2562393 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
single-strand binding protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_16
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


comp(12155..12436)
DNA (282bp) protein (94aa)
30S ribosomal protein S6 id=1275942 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
30S ribosomal protein S6
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_17
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

12647..13090
DNA (444bp) protein (148aa)
Uncharacterized protein id=2562387 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_18
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(13141..13902)
DNA (762bp) protein (254aa)
putative transcriptional acitvator, Baf family (EC:2.7.1.33)
Type III pantothenate kinase id=2562382 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_365_curated_19
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists


14096..15364
DNA (1269bp) protein (423aa)
histidyl-tRNA synthetase (EC:6.1.1.21) rbh
Histidine--tRNA ligase id=2562380 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Displaying 19 items

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