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S13_scaffold_646_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_646_curated_1
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1..537
DNA (537bp) protein (179aa)
arb; 6-phospho-beta-glucosidase (EC:3.2.1.86)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:183 RepID=R5RGH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33896.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
S13_scaffold_646_curated_2
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(563..901)
DNA (339bp) protein (113aa)
Rubredoxin-type Fe(Cys)4 protein id=1856067 bin=GWE2_Firmicute_51_13 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
rubredoxin-type Fe(Cys)4 protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_3
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1016..1597)
DNA (582bp) protein (194aa)
fructose-2,6-bisphosphatase (EC:5.4.2.1)
Fructose-2,6-bisphosphatase n=1 Tax=Clostridium intestinale URNW RepID=U2NLC3_9CLOT rbh
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:ERK29943.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
S13_scaffold_646_curated_4
Tolumonas auensis, Tolumonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1701..2573
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LEC6_TOLAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ92943.1}; TaxID=595494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Tolumonas.;" source="Tolumonas auensis (strain DSM 9187 / TA4).;"
S13_scaffold_646_curated_5
RIFOXYB2_FULL_Tenericutes_36_25_curated, Tenericutes, Bacteria

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2726..3766
DNA (1041bp) protein (347aa)
id=2424858 bin=GWF1_Tenericute_35_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Tenericute_35_14 organism_group=Tenericutes rbh
Tax=RIFOXYB2_FULL_Tenericutes_36_25_curated
S13_scaffold_646_curated_6
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3817..4176
DNA (360bp) protein (120aa)
LrgA family protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RML7_9FIRM
LrgA {ECO:0000313|EMBL:KEZ88843.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
putative effector of murein hydrolase LrgA
S13_scaffold_646_curated_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4169..4843
DNA (675bp) protein (225aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E91EC5
LrgB family protein {ECO:0000313|EMBL:CDD77390.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
putative effector of murein hydrolase
S13_scaffold_646_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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5349..7370
DNA (2022bp) protein (674aa)
ammonium transporter id=2108548 bin=GWE2_Firmicute_51_13 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
ammonium transporter rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_9
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7481..8239
DNA (759bp) protein (253aa)
Formate/nitrite transporter n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QR25_9FIRM
Formate/nitrite transporter {ECO:0000313|EMBL:CCZ24656.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
hypothetical protein
S13_scaffold_646_curated_10
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9858..10475
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Catenibacterium sp. CAG:290 RepID=R7GJR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE27355.1}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
S13_scaffold_646_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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10726..12639
DNA (1914bp) protein (638aa)
methionyl-tRNA synthetase (EC:6.1.1.10) rbh
Methionine--tRNA ligase id=4649596 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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12636..13259
DNA (624bp) protein (208aa)
Methylated-DNA--protein-cysteine methyltransferase id=2188931 bin=GWE2_Firmicute_51_13 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
HhH-GPD superfamily base excision DNA repair protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(13284..14888)
DNA (1605bp) protein (535aa)
Brp/Blh family beta-carotene 15,15'-monooxygenase id=2188937 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_14
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(14893..15543)
DNA (651bp) protein (217aa)
Brp/Blh family beta-carotene 15,15'-monooxygenase id=4649599 bin=GWF2_Firmicute_51_9 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_15
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(15527..16417)
DNA (891bp) protein (297aa)
ABC transporter, ATP-binding protein id=4649600 bin=GWF2_Firmicute_51_9 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
ABC transporter ATP-binding protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_16
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(16414..17091)
DNA (678bp) protein (226aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein id=2189207 bin=GWE2_Firmicute_51_13 species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
integral membrane sensor signal transduction histidine kinase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(17088..17453)
DNA (366bp) protein (122aa)
Transcriptional regulator, GntR family id=4649601 bin=GWF2_Firmicute_51_9 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
GntR family transcriptional regulator
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_18
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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comp(17561..18109)
DNA (549bp) protein (183aa)
Diguanylate cyclase/phosphodiesterase id=2230272 bin=GWB2_Clostridiales_37_7 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
diguanylate cyclase/phosphodiesterase
Tax=GWB2_Clostridiales_37_7_curated
S13_scaffold_646_curated_19
Selenomonas sp. oral taxon 892, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19470..19982
DNA (513bp) protein (171aa)
Acetyltransferase, GNAT family n=1 Tax=Selenomonas sp. oral taxon 892 str. F0426 RepID=U2JVW7_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERJ90436.1}; TaxID=1321786 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 892 str. F0426.;"
hypothetical protein
S13_scaffold_646_curated_20
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20018..21280
DNA (1263bp) protein (421aa)
ATP-binding protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000368EEC8 rbh
ATP-binding protein {ECO:0000313|EMBL:KIO47490.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
Predicted ATPase (AAA+ superfamily) rbh
S13_scaffold_646_curated_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(21419..22291)
DNA (873bp) protein (291aa)
Ferritin CCC1 C, Ferritin CCC1 like C id=2188947 bin=GWE2_Firmicute_51_13 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
hypothetical protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_646_curated_22
Spiroplasma syrphidicola, Spiroplasma, Entomoplasmatales, Mollicutes, Tenericutes, Bacteria

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22395..22565
DNA (171bp) protein (57aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG id=2188949 bin=GWE2_Firmicute_51_13 species=Erysipelotrichaceae bacterium 3_1_53 genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1276229 species="Bacteria; Tenericutes; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.;" source="Spiroplasma syrphidicola EA-1.;"
Displaying 22 items

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