ggKbase home page

13_1_40cm_4_scaffold_579

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_579_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..1369)
DNA (1368bp) protein (456aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14426358 bin=bin1_lowGC species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin1_lowGC organism_group=Unknown_CP
Polysulfide reductase NrfD
13_1_40cm_4_scaffold_579_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(1369..4365)
DNA (2997bp) protein (999aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14429767 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=CSP1_5_NC10
putative oxidoreductase
13_1_40cm_4_scaffold_579_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4487..5080)
DNA (594bp) protein (198aa)
cytochrome c3 Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c2 id=14426356 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
actA; menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA
13_1_40cm_4_scaffold_579_4
unknown

Not on your lists

comp(5187..5648)
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_4_scaffold_579_5
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5728..8730)
DNA (3003bp) protein (1001aa)
glycoside hydrolase n=1 Tax=Spirosoma luteum RepID=UPI00037DC541
glycoside hydrolase
Glycoside hydrolase {ECO:0000313|EMBL:AKD54957.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
13_1_40cm_4_scaffold_579_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8790..9953)
DNA (1164bp) protein (388aa)
Mandelate racemase/muconate lactonizing protein; K02549 O-succinylbenzoate synthase [EC:4.2.1.113] Tax=GWC2_Gemmatimonadetes_71_10_curated
Mandelate racemase/muconate lactonizing protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CFI0_KOSOT
Mandelate racemase/muconate lactonizing protein
13_1_40cm_4_scaffold_579_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9904..11073)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9LL98_9BACL
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_579_8
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11051..11962)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Paenibacillus fonticola RepID=UPI000380DAFC
Dihydrodipicolinate synthetase family protein {ECO:0000313|EMBL:KFM95769.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus ma
dihydrodipicolinate synthetase
13_1_40cm_4_scaffold_579_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11925..12719)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9A3_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
amidohydrolase 2
13_1_40cm_4_scaffold_579_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12719..13519)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9A4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
amidohydrolase 2
13_1_40cm_4_scaffold_579_11
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

13610..14227
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW34694.1}; TaxID=1618986 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
Putative uncharacterized protein id=4476370 bin=GWC2_Syntrophobacterales_56_13 species=Sphingomonas wittichii genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_4_scaffold_579_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14232..15407)
DNA (1176bp) protein (392aa)
putative aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9A5_GEMAT
putative aminotransferase
13_1_40cm_4_scaffold_579_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15364..16050)
DNA (687bp) protein (229aa)
putative methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9A6_GEMAT
tRNA/rRNA methyltransferase (SpoU)
13_1_40cm_4_scaffold_579_14
unknown

Not on your lists

17801..18655
DNA (855bp) protein (285aa)

This feature has no annotations

13_1_40cm_4_scaffold_579_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18934..19947)
DNA (1014bp) protein (338aa)
GHMP kinase; K07031 D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] Tax=GWC2_Gemmatimonadetes_71_10_curated
GHMP kinase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6FA7D
GHMP kinase
13_1_40cm_4_scaffold_579_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19944..21392)
DNA (1449bp) protein (483aa)
Putative peptide ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9A8_GEMAT
putative peptide ABC transporter substrate binding protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC-type transporter, periplasmic subunit
13_1_40cm_4_scaffold_579_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

21453..22424
DNA (972bp) protein (324aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S5I0_PROA2
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
ABC-type transporter, integral membrane subunit
13_1_40cm_4_scaffold_579_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22421..23272
DNA (852bp) protein (284aa)
Putative peptide ABC transporter permease protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9B0_GEMAT
ABC-type transporter, integral membrane subunit
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG91176.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_579_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23277..24482
DNA (1206bp) protein (402aa)
glycine cleavage T protein (aminomethyl transferase); K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00035EAA9A
glycine cleavage T protein (aminomethyl transferase)
13_1_40cm_4_scaffold_579_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

24482..26062
DNA (1581bp) protein (527aa)
FAD dependent oxidoreductase n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB99_9BACT
FAD dependent oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_579_21
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

26062..27618
DNA (1557bp) protein (519aa)
FAD dependent oxidoreductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS78_KORVE
FAD dependent oxidoreductase Tax=RBG_16_Chloroflexi_63_12_curated
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_579_22
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

27623..28780
DNA (1158bp) protein (386aa)
Rieske (2Fe-2S) domain protein n=2 Tax=Chloroflexus RepID=A9WGM6_CHLAA
hypothetical protein; K00479 Rieske 2Fe-2S family protein Tax=RBG_16_Chloroflexi_54_18_curated
Rieske (2Fe-2S) domain-containing protein
13_1_40cm_4_scaffold_579_23
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28824..29477)
DNA (654bp) protein (218aa)
phospholipase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B4AF55
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII54108.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
13_1_40cm_4_scaffold_579_24
unknown

Not on your lists

29570..29884
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_4_scaffold_579_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(29980..31818)
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9B1_GEMAT
glycoside hydrolase family 38
Glycoside hydrolase family 38 {ECO:0000313|EMBL:AHG91178.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_579_26
unknown

Not on your lists

31989..32600
DNA (612bp) protein (204aa)

This feature has no annotations

13_1_40cm_4_scaffold_579_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

32656..35043
DNA (2388bp) protein (796aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WTX1_KYRT2
Phosphoesterase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
40-residue YVTN family beta-propeller repeat-containing protein
13_1_40cm_4_scaffold_579_28
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(35100..36422)
DNA (1323bp) protein (441aa)
transaldolase; K13810 transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] Tax=RBG_16_Chloroflexi_64_32_curated
Putative Transaldolase Phosphoglucose isomerase id=1945564 bin=GWD2_Deltaproteobacteria_55_8 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
bifunctional transaldolase/phosoglucose isomerase
13_1_40cm_4_scaffold_579_29

Not on your lists

comp(36467..37675)
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR1_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89251.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
hypothetical protein
Displaying 29 items

View Taxonomy