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13_1_40cm_4_scaffold_91

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_91_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3..986
DNA (984bp) protein (328aa)
Phosphate ABC transporter membrane protein 1, PhoT family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMC5_KORVE
phosphate ABC transporter permease; K02037 phosphate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphate ABC transporter permease
13_1_40cm_4_scaffold_91_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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983..1828
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000372185D
phosphate ABC transporter permease; K02038 phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphate ABC transporter permease
13_1_40cm_4_scaffold_91_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1812..2588
DNA (777bp) protein (259aa)
phosphate ABC transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Phosphate ABC transporter, ATPase subunit n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3Y4_DESAT
phosphate ABC transporter, ATPase subunit
13_1_40cm_4_scaffold_91_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2585..3415
DNA (831bp) protein (277aa)
phosphate transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] Tax=GWC2_Gemmatimonadetes_71_10_curated
pstB; phosphate ABC transporter ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=PSTB_HYPNA
13_1_40cm_4_scaffold_91_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3412..4122
DNA (711bp) protein (237aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB06_GEMAT
phoU; phosphate transport system regulatory protein PhoU; K02039 phosphate transport system protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phoU; phosphate transport system regulatory protein PhoU
13_1_40cm_4_scaffold_91_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(4107..4883)
DNA (777bp) protein (259aa)
rhomboid family protein id=12557265 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rhomboid family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
rhomboid family protein
13_1_40cm_4_scaffold_91_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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4998..6923
DNA (1926bp) protein (642aa)
Chaperone protein DnaK n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB12_GEMAT
dnaK; chaperone protein DnaK; K04043 molecular chaperone DnaK Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperone protein dnaK
13_1_40cm_4_scaffold_91_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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6961..8535
DNA (1575bp) protein (525aa)
Putative S1 family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB13_GEMAT
putative S1 family peptidase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PDZ/DHR/GLGF domain protein
13_1_40cm_4_scaffold_91_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(8628..10781)
DNA (2154bp) protein (718aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035EFF67
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein rbh
13_1_40cm_4_scaffold_91_10
unknown

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comp(10908..11576)
DNA (669bp) protein (223aa)

This feature has no annotations

13_1_40cm_4_scaffold_91_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11665..12168
DNA (504bp) protein (168aa)
hypothetical protein
hypothetical membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
alias=16ft_combo_ws3_scaffold_11273_12 id=14625152 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_91_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(12209..13081)
DNA (873bp) protein (291aa)
Putative CtaG protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5P0_GEMAT
ctaG; putative CtaG protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_1_40cm_4_scaffold_91_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(13078..13407)
DNA (330bp) protein (110aa)
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_4_scaffold_91_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13468..14052)
DNA (585bp) protein (195aa)
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase subunit III id=4393248 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_91_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14056..15846)
DNA (1791bp) protein (597aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_40cm_4_scaffold_91_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15843..16841)
DNA (999bp) protein (333aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=14625147 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase subunit II (EC:1.9.3.1)
13_1_40cm_4_scaffold_91_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(16849..20148)
DNA (3300bp) protein (1100aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADR0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89180.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_91_18
unknown

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comp(20235..20915)
DNA (681bp) protein (227aa)

This feature has no annotations

13_1_40cm_4_scaffold_91_19
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21060..21800
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TER9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04938.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_40cm_4_scaffold_91_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(21797..22195)
DNA (399bp) protein (133aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative pilin
13_1_40cm_4_scaffold_91_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(22511..23284)
DNA (774bp) protein (258aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJF8_RHOM4
Crp/FNR family transcriptional regulator
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:ACY48616.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="
Displaying 21 items

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