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13_1_20cm_4_scaffold_60

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_60_1
unknown

Not on your lists

comp(3..155)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_4_scaffold_60_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152..787)
DNA (636bp) protein (212aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteri
Isoprenyl transferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UKU4_METS4
undecaprenyl pyrophosphate synthase
13_1_20cm_4_scaffold_60_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(816..1184)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E491F
transcriptional regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
transcriptional regulator
13_1_20cm_4_scaffold_60_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1177..1761)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJU1_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:AHG88547.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_4_scaffold_60_5
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

1833..2660
DNA (828bp) protein (276aa)
D-aminopeptidase DppA n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZ85_THEOJ
D-aminopeptidase DppA Tax=RBG_13_Aminicenantes_59_9_curated
D-aminopeptidase DppA
13_1_20cm_4_scaffold_60_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2705..3772
DNA (1068bp) protein (356aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_4_scaffold_60_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

3751..6552
DNA (2802bp) protein (934aa)
Outer membrane receptor protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ANQ3_IGNAJ
TonB-dependent receptor Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
TonB-dependent receptor
13_1_20cm_4_scaffold_60_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(6549..7772)
DNA (1224bp) protein (408aa)
PHP domain protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PHP domain protein
13_1_20cm_4_scaffold_60_9
unknown

Not on your lists

7798..8130
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_20cm_4_scaffold_60_10
unknown

Not on your lists

8127..8624
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_20cm_4_scaffold_60_11
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8776..9477)
DNA (702bp) protein (234aa)
Putative transcriptional regulator n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XFI0_NAKMY
Putative transcriptional regulator {ECO:0000313|EMBL:ACV79957.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (stra
transcriptional regulator
13_1_20cm_4_scaffold_60_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

9570..10748
DNA (1179bp) protein (393aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=24466825 bin=RBG_19FT_COMBO_GAL15_69_19 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
13_1_20cm_4_scaffold_60_13
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10763..11476)
DNA (714bp) protein (238aa)
Oxidoreductase molybdopterin binding n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J5N4_ANAD2
Molybdopterin-binding protein {ECO:0000313|EMBL:KFA91690.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
molybdopterin binding oxidoreductase
13_1_20cm_4_scaffold_60_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11469..12059)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWF5_CORCM
Di-heme cytochrome, transmembrane {ECO:0000313|EMBL:AHG87864.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Di-heme cytochrome, transmembrane
13_1_20cm_4_scaffold_60_15
unknown

Not on your lists

12225..12740
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_20cm_4_scaffold_60_16
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12746..14122
DNA (1377bp) protein (459aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQU8_KYRT2
amidohydrolase domain-containing protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
amidohydrolase
13_1_20cm_4_scaffold_60_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14119..15108
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000364E6A7
cytochrome c, class I Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
cytochrome c, class I
13_1_20cm_4_scaffold_60_18
Streptomyces griseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15053..16078)
DNA (1026bp) protein (342aa)
Transcriptional regulator, LysR family n=2 Tax=Streptomyces griseus RepID=G0PTK8_STRGR
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGE40990.1}; TaxID=649189 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus
LysR family transcriptional regulator
13_1_20cm_4_scaffold_60_19

Not on your lists

16168..16872
DNA (705bp) protein (235aa)
Excisionase/Xis, DNA-binding n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NUW0_9DELT
Transcriptional repressor of DCM dehalogenase {ECO:0000313|EMBL:AHN97947.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
excisionase family DNA binding domain-containing protein
13_1_20cm_4_scaffold_60_20

Not on your lists

16990..17574
DNA (585bp) protein (195aa)
Candidate response regulator, NarL n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX74_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:KKL16352.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
response regulator NarL
13_1_20cm_4_scaffold_60_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17595..19217)
DNA (1623bp) protein (541aa)
Methyl-accepting chemotaxis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3H1_GEMAT
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
methyl-accepting chemotaxis protein
13_1_20cm_4_scaffold_60_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19273..21582)
DNA (2310bp) protein (770aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9E2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_4_scaffold_60_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21711..22925)
DNA (1215bp) protein (405aa)
Putative macrolide efflux ABC transporter permease n=3 Tax=Myxococcus RepID=F8CKF2_MYXFH id=5224471 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative macrolide efflux ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative macrolide efflux ABC transporter permease
13_1_20cm_4_scaffold_60_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(22928..24325)
DNA (1398bp) protein (466aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
RND family efflux transporter MFP subunit
13_1_20cm_4_scaffold_60_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24322..25890)
DNA (1569bp) protein (523aa)
Macrolide-specific efflux protein MacA n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQP0_STIAD id=5224472 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
macrolide-specific efflux protein maca; K02005 HlyD family secretion protein Tax=RBG_16_RIF_WS3X_71_46_curated
efflux transporter, RND family, MFP subunit
13_1_20cm_4_scaffold_60_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25887..26612)
DNA (726bp) protein (242aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7H8_GEMAT
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_60_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26627..27937)
DNA (1311bp) protein (437aa)
Putative outer membrane macrolide efflux protein n=2 Tax=Myxococcus RepID=Q1D4Q0_MYXXD id=5224473 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
outer membrane macrolide efflux protein Tax=RBG_16_RIF_WS3X_71_46_curated
outer membrane efflux protein
13_1_20cm_4_scaffold_60_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(27934..28335)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_20cm_4_scaffold_60_29
unknown

Not on your lists

comp(28351..28686)
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_20cm_4_scaffold_60_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(28683..28928)
DNA (246bp) protein (82aa)
Sigma-70 region 2 domain-containing protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RHK6_9ACTO
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
RNA polymerase sigma factor, sigma-70 family
Displaying items 1-30 of 60 in total

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