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13_1_20cm_4_scaffold_229

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_229_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165..3224)
DNA (3060bp) protein (1020aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAB1_ACIDE
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:EER58584.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
CzcA family heavy metal efflux protein
13_1_20cm_4_scaffold_229_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3229..4221)
DNA (993bp) protein (331aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCF6_9BACT rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEF62624.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia sub
efflux transporter, rnd family, mfp subunit
13_1_20cm_4_scaffold_229_3
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4383..5621)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00038286F0
Transporter {ECO:0000313|EMBL:KHD32927.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;
outer membrane efflux protein
13_1_20cm_4_scaffold_229_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5691..6761)
DNA (1071bp) protein (357aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" s
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABQ3_GEMAT rbh
two-component histidine kinase
13_1_20cm_4_scaffold_229_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6782..7492)
DNA (711bp) protein (237aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABQ2_GEMAT
Response regulator receiver {ECO:0000313|EMBL:AHG92379.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
response regulator receiver
13_1_20cm_4_scaffold_229_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7496..7708)
DNA (213bp) protein (71aa)
Sec-independent protein translocase protein TatA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4E7_GEMAT
twin arginine-targeting protein translocase, TatA/E family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tatA; Sec-independent protein translocase protein tatA/E
13_1_20cm_4_scaffold_229_7

Not on your lists

comp(7797..8354)
DNA (558bp) protein (186aa)
Response regulator receiver protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D048_9BACT id=126151 bin=ACD79 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Response regulator receiver protein {ECO:0000313|EMBL:EKD27071.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
response regulator receiver protein
13_1_20cm_4_scaffold_229_trna_2
unknown

Not on your lists

comp(8360..8433)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_229_8
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8549..9316
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0D431_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ83160.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresc
hypothetical protein
13_1_20cm_4_scaffold_229_9
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9420..11006
DNA (1587bp) protein (529aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3) Tax=CG_Delta_03
Multi-sensor hybrid histidine kinase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCI6_GALCS
multi-sensor hybrid histidine kinase
13_1_20cm_4_scaffold_229_10
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10982..11722
DNA (741bp) protein (247aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IEI3_BEII9
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
13_1_20cm_4_scaffold_229_11
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

11722..12276
DNA (555bp) protein (185aa)
Response regulator receiver protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EKM4_CORAD
Response regulator receiver protein {ECO:0000313|EMBL:ADE54931.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomarg
response regulator receiver protein
13_1_20cm_4_scaffold_229_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12294..12743)
DNA (450bp) protein (150aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_229_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12740..14116)
DNA (1377bp) protein (459aa)
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG91765.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_229_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14133..17090)
DNA (2958bp) protein (986aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH24_RHOM4
TonB-dependent receptor {ECO:0000313|EMBL:AHG91764.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
TonB-dependent receptor
13_1_20cm_4_scaffold_229_trna_1
unknown

Not on your lists

comp(17191..17264)
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_229_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(17330..17941)
DNA (612bp) protein (204aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
nucleoside-triphosphatase rdgB (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP63_DESK7
13_1_20cm_4_scaffold_229_16
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17938..18300)
DNA (363bp) protein (121aa)
RfaE bifunctional protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NI68_DESAR
RfaE bifunctional protein {ECO:0000313|EMBL:AEB09837.1}; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca a
rfaE bifunctional protein
13_1_20cm_4_scaffold_229_17
unknown

Not on your lists

18307..18489
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_20cm_4_scaffold_229_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18414..18782)
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_229_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18776..19264)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8Q1_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Rare lipoprotein B
13_1_20cm_4_scaffold_229_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(19242..19964)
DNA (723bp) protein (241aa)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_4_scaffold_229_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19961..22834)
DNA (2874bp) protein (958aa)
WD40 domain protein beta Propeller Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
WD40 domain protein beta propeller id=1251003 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
WD40 domain protein beta Propeller
13_1_20cm_4_scaffold_229_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22831..24891)
DNA (2061bp) protein (687aa)
Peptidyl-prolyl cis-trans isomerase ppiA n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=J2AET0_9DELT id=5224324 bin=16ft_combo_ws3_JS1 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cyclophilin type peptidyl-prolyl cis-trans isomerase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase
13_1_20cm_4_scaffold_229_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24851..25267)
DNA (417bp) protein (139aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYX8_9BACT
hypothetical protein
13_1_20cm_4_scaffold_229_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25287..27326)
DNA (2040bp) protein (680aa)
Putative aldehyde dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9C6_GEMAT
Aldehyde Dehydrogenase {ECO:0000313|EMBL:AHG90561.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Aldehyde Dehydrogenase
13_1_20cm_4_scaffold_229_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(27588..28592)
DNA (1005bp) protein (335aa)
Deoxyribose-phosphate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9C7_GEMAT
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:AHG90560.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
deoxyribose-phosphate aldolase
13_1_20cm_4_scaffold_229_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(28627..29817)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P851_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_20cm_4_scaffold_229_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

29871..30479
DNA (609bp) protein (203aa)
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=24407690 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Calcineurin-like phosphoesterase superfamily domain protein
13_1_20cm_4_scaffold_229_28
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30451..31245)
DNA (795bp) protein (265aa)
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate racemase
Glutamate racemase id=3490282 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Displaying items 1-30 of 40 in total

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