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13_1_20cm_4_scaffold_641

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_641_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..1373)
DNA (1371bp) protein (457aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K2_GEMAT
ccmF; cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF Tax=GWC2_Gemmatimonadetes_71_10_curated
cytochrome c assembly protein
13_1_20cm_4_scaffold_641_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1374..1799)
DNA (426bp) protein (142aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K1_GEMAT
ccmE; cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CcmE/CycJ protein
13_1_20cm_4_scaffold_641_3

Not on your lists

comp(1786..2253)
DNA (468bp) protein (156aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SIR4_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL56050.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
hypothetical protein
13_1_20cm_4_scaffold_641_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2250..3725)
DNA (1476bp) protein (492aa)
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" so
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K0_GEMAT rbh
13_1_20cm_4_scaffold_641_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3722..4747)
DNA (1026bp) protein (342aa)
initiation factor 2B related family protein; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
mtnA; 5-methylthioribose-1-phosphate isomerase (EC:5.3.1.23) id=14430365 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
translation initiation factor 2B subunit I (EC:5.3.1.23)
13_1_20cm_4_scaffold_641_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

4924..5706
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Short chain enoyl-CoA hydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T70_SOLUE
13_1_20cm_4_scaffold_641_7
unknown

Not on your lists

5769..6053
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_20cm_4_scaffold_641_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

6111..6434
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein of unknown function DUF721
13_1_20cm_4_scaffold_641_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6442..8397
DNA (1956bp) protein (652aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=861299 species="Bacteria; Ge
DNA gyrase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J5_GEMAT
DNA gyrase B subunit
13_1_20cm_4_scaffold_641_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8410..9747)
DNA (1338bp) protein (446aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:BAH37835.1}; EC=2.4.2.2 {ECO:0000313|EMBL:BAH37835.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gem
pdp; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H5_GEMAT
13_1_20cm_4_scaffold_641_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

9755..10540
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H4_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_20cm_4_scaffold_641_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10561..11925)
DNA (1365bp) protein (455aa)
Xaa-Pro aminopeptidase (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Xaa-Pro aminopeptidase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJB6_CHLTF
13_1_20cm_4_scaffold_641_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11976..12770
DNA (795bp) protein (265aa)
Sensor histidine kinase/response regulator n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D3G7_MYXXD
sensor histidine kinase/response regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
sensor histidine kinase/response regulator
13_1_20cm_4_scaffold_641_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12767..14776
DNA (2010bp) protein (670aa)
ligA; NAD(+)-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
DNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DNLJ_GEMAT
DNA ligase
13_1_20cm_4_scaffold_641_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14789..15325
DNA (537bp) protein (179aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_641_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15383..16714)
DNA (1332bp) protein (444aa)
peptidase U62 modulator of DNA gyrase; K03592 PmbA protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Peptidase U62, modulator of DNA gyrase id=2026682 bin=GWD2_Chloroflexi_49_16 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
peptidase U62 modulator of DNA gyrase
13_1_20cm_4_scaffold_641_17
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(16711..18090)
DNA (1380bp) protein (460aa)
peptidase U62 modulator of DNA gyrase; K03568 TldD protein Tax=GWC2_Chloroflexi_49_37_curated
Peptidase id=2037494 bin=GWB2_Chloroflexi_49_20 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good rbh
peptidase U62 modulator of DNA gyrase
13_1_20cm_4_scaffold_641_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18101..18433)
DNA (333bp) protein (111aa)
Purine phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H0_GEMAT
purine phosphoribosyltransferase; K07101 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphoribosyltransferase
13_1_20cm_4_scaffold_641_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

18450..18968
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G9_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_2 repeat-containing protein
13_1_20cm_4_scaffold_641_20
unknown

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18983..19501
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_20cm_4_scaffold_641_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

19524..21359
DNA (1836bp) protein (612aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
AMP-dependent synthetase and ligase
fadD; Long-chain acyl-CoA synthetase id=17241408 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_20cm_4_scaffold_641_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21392..22021)
DNA (630bp) protein (210aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_641_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(22035..22733)
DNA (699bp) protein (233aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G3_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
short-chain dehydrogenase/reductase SDR
13_1_20cm_4_scaffold_641_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22730..23299)
DNA (570bp) protein (190aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|
GTP cyclohydrolase 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G2_GEMAT
GTP cyclohydrolase 1
13_1_20cm_4_scaffold_641_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23330..24454
DNA (1125bp) protein (375aa)
Sodium/calcium exchanger membrane region n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CF48_THET1 id=5225356 bin=16ft_combo_ws3_JS1 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sodium/calcium exchanger membrane region; K07301 inner membrane protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
sodium/calcium exchanger membrane region
13_1_20cm_4_scaffold_641_26
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

24827..25144
DNA (318bp) protein (106aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T694_THEA1
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADU96678.1}; TaxID=648996 species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammo
Cupin 2 conserved barrel domain protein
13_1_20cm_4_scaffold_641_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25141..26109)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F9_GEMAT
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AHG90235.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
GCN5-related N-acetyltransferase
13_1_20cm_4_scaffold_641_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(26090..28519)
DNA (2430bp) protein (810aa)
Exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F7_GEMAT
SMC domain protein {ECO:0000313|EMBL:AHG90234.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SMC domain protein
13_1_20cm_4_scaffold_641_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(28516..29733)
DNA (1218bp) protein (406aa)
Exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F6_GEMAT
exonuclease Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Calcineurin-like phosphoesterase superfamily domain protein
13_1_20cm_4_scaffold_641_30
unknown

Not on your lists

comp(29730..30125)
DNA (396bp) protein (132aa)

This feature has no annotations

Displaying 30 items

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