ggKbase home page

13_1_20cm_4_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_86_1
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(1..309)
DNA (309bp) protein (103aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EEZ0_AMICL
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
13_1_20cm_4_scaffold_86_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(363..1568)
DNA (1206bp) protein (402aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F5_GEMAT
3,4-dihydroxy-2-butanone 4-phosphate synthase
13_1_20cm_4_scaffold_86_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1550..2137)
DNA (588bp) protein (196aa)
ribE; riboflavin synthase alpha chain (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Riboflavin synthase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F4_GEMAT
Lumazine-binding domain protein
13_1_20cm_4_scaffold_86_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2119..3189)
DNA (1071bp) protein (357aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-
Riboflavin biosynthesis protein RibD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F3_GEMAT
riboflavin biosynthesis protein RibD
13_1_20cm_4_scaffold_86_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3203..4246)
DNA (1044bp) protein (348aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F1_GEMAT
phosphoribosylformylglycinamidine cyclo-ligase
13_1_20cm_4_scaffold_86_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(4243..5166)
DNA (924bp) protein (308aa)
PfkB family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F0_GEMAT
PfkB family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
PfkB domain protein
13_1_20cm_4_scaffold_86_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(5163..6341)
DNA (1179bp) protein (393aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=GWC2_Gemmatimonadetes_71_10_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8E9_GEMAT
13_1_20cm_4_scaffold_86_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6295..6714)
DNA (420bp) protein (140aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Arginine--tRNA ligase n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GYY7_9GAMM
arginyl-tRNA synthetase
13_1_20cm_4_scaffold_86_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6711..7001)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:700 RepID=R5LU82_9SPIR
type I antifreeze protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
regulatory protein, FmdB family
13_1_20cm_4_scaffold_86_10
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7013..7240)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2RF04_STRVP
Uncharacterized protein {ECO:0000313|EMBL:CCA59689.1}; TaxID=953739 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC
hypothetical protein
13_1_20cm_4_scaffold_86_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7268..7717)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036E6A97
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_4_scaffold_86_12
unknown

Not on your lists

comp(7735..7956)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_20cm_4_scaffold_86_13
unknown

Not on your lists

8051..8236
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_20cm_4_scaffold_86_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8229..8630)
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Thermotoga RepID=B9KAZ1_THENN
holliday junction resolvase-like protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Holliday junction resolvase
13_1_20cm_4_scaffold_86_15
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(8699..9199)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AFDD3
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
hypothetical protein
13_1_20cm_4_scaffold_86_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9246..10136)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362ADA2
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AHG88425.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Xylose isomerase domain-containing protein TIM barrel
13_1_20cm_4_scaffold_86_17
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(10138..10974)
DNA (837bp) protein (279aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG1_RHOM4
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ACY48619.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rho
xylose isomerase domain-containing protein
13_1_20cm_4_scaffold_86_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10989..12647)
DNA (1659bp) protein (553aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG4_RHOM4
glucose-methanol-choline oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glucose-methanol-choline oxidoreductase
13_1_20cm_4_scaffold_86_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12644..13075)
DNA (432bp) protein (144aa)
twin-arginine translocation pathway signal protein n=1 Tax=Spirosoma luteum RepID=UPI0003796D02
Uncharacterized protein {ECO:0000313|EMBL:BAH40174.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
hypothetical protein
13_1_20cm_4_scaffold_86_20
unknown

Not on your lists

comp(13164..13733)
DNA (570bp) protein (190aa)

This feature has no annotations

13_1_20cm_4_scaffold_86_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13820..14581)
DNA (762bp) protein (254aa)
Esterase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIM0_RHOMR
Esterase {ECO:0000313|EMBL:AEN72353.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
esterase
13_1_20cm_4_scaffold_86_22
unknown

Not on your lists

comp(14596..15129)
DNA (534bp) protein (178aa)

This feature has no annotations

13_1_20cm_4_scaffold_86_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15126..15539)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI39_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_20cm_4_scaffold_86_24
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(15539..16924)
DNA (1386bp) protein (462aa)
beta-lactamase Tax=RBG_13_Aminicenantes_62_12_curated
Beta-lactamase id=8266027 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
penicillin-binding protein
13_1_20cm_4_scaffold_86_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16928..18475)
DNA (1548bp) protein (516aa)
putative isobutyryl-CoA mutase large subunit; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative isobutyryl-CoA mutase large subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8D9_GEMAT
methylmalonyl-CoA mutase, large subunit
13_1_20cm_4_scaffold_86_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18472..19446)
DNA (975bp) protein (325aa)
fbp; fructose-1,6-bisphosphatase class I; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11] Tax=GWC2_Gemmatimonadetes_71_10_curated
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8D8_GEMAT
Fructose-1,6-bisphosphatase class 1
13_1_20cm_4_scaffold_86_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19457..21667)
DNA (2211bp) protein (737aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8D7_GEMAT
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:AHG90641.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA internalization-related competence protein ComEC/Rec2
13_1_20cm_4_scaffold_86_28
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21680..21964)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KFB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS44993.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
13_1_20cm_4_scaffold_86_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21955..23280)
DNA (1326bp) protein (442aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8D6_GEMAT
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB
13_1_20cm_4_scaffold_86_30
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23283..24521)
DNA (1239bp) protein (413aa)
tRNA 2-methylthioadenosine synthase-like protein Tax=GWC2_Gemmatimonadetes_71_10_curated
tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase id=4947253 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mtaB; tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
Displaying items 1-30 of 42 in total

View Taxonomy