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13_1_20cm_2_scaffold_229

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_229_1
unknown

Not on your lists

comp(3..149)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_2_scaffold_229_2
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(246..872)
DNA (627bp) protein (209aa)
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] Tax=RBG_16_RIF_CHLX_72_14_curated
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7S7_SPHTD
13_1_20cm_2_scaffold_229_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(869..1264)
DNA (396bp) protein (132aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_20cm_2_scaffold_229_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1291..1974)
DNA (684bp) protein (228aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT rbh
tRNA (guanine-N(1)-)-methyltransferase
13_1_20cm_2_scaffold_229_5
unknown

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comp(1961..2191)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_20cm_2_scaffold_229_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2558..3985
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036C55AD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_229_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3969..5186)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_229_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5174..6322)
DNA (1149bp) protein (383aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B575F8
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
AAA ATPase central domain protein
13_1_20cm_2_scaffold_229_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6326..7096)
DNA (771bp) protein (257aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_1_20cm_2_scaffold_229_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7086..7901)
DNA (816bp) protein (272aa)
Uncharacterized tRNA/rRNA methyltransferase YsgA n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DXJ1_9FIRM
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase (SpoU)
13_1_20cm_2_scaffold_229_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7935..8747
DNA (813bp) protein (271aa)
phosphomethylpyrimidine kinase n=1 Tax=Meiothermus timidus RepID=UPI000377A00C
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Phosphomethylpyrimidine kinase
13_1_20cm_2_scaffold_229_12
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(8826..11420)
DNA (2595bp) protein (865aa)
Putative membrane associated hydrolase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A376_MELRP alias=16ft_combo_ws3_scaffold_1578_12 id=5223974 tax=16ft_combo_ws3 species=Melioribacter roseus (strain P3M) genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteria
membrane associated hydrolase Tax=GWC2_Ignavibacteria_rel_36_12_curated
membrane associated hydrolase
13_1_20cm_2_scaffold_229_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11547..12359)
DNA (813bp) protein (271aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ0_GEMAT
13_1_20cm_2_scaffold_229_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12356..13762)
DNA (1407bp) protein (469aa)
Na+ dependent nucleoside transporter n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM43_KORVE
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Na+ dependent nucleoside transporter
13_1_20cm_2_scaffold_229_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13759..15006)
DNA (1248bp) protein (416aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
adenosine deaminase n=1 Tax=Myxococcus xanthus RepID=UPI00004FDBC5
adenosine deaminase
13_1_20cm_2_scaffold_229_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15006..18143)
DNA (3138bp) protein (1046aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16)
2',3'-cyclic-nucleotide 2'-phosphodiesterase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ3_GEMAT
13_1_20cm_2_scaffold_229_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18193..19095
DNA (903bp) protein (301aa)
Putative hydrolase (Metallo-beta-lactamase superfamily) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN56_SINAD
Putative hydrolase (Metallo-beta-lactamase superfamily) {ECO:0000313|EMBL:AGA30809.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphae
hydrolase
13_1_20cm_2_scaffold_229_18
unknown

Not on your lists

19095..19370
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_20cm_2_scaffold_229_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19416..20120
DNA (705bp) protein (235aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ5_GEMAT
phoB; phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curat
phoB; phosphate regulon transcriptional regulatory protein PhoB
13_1_20cm_2_scaffold_229_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

20117..21844
DNA (1728bp) protein (576aa)
phoR; phosphate regulon sensor protein PhoR; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curat
Phosphate regulon sensor protein PhoR n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ6_GEMAT
phoR; phosphate regulon sensor protein PhoR
13_1_20cm_2_scaffold_229_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21939..22961
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI00037AB901
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_2_scaffold_229_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22980..23864
DNA (885bp) protein (295aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4D79E
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ABC transporter periplasmic phosphate binding protein
Displaying 22 items

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