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13_1_20cm_2_scaffold_3315

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3315_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..1662)
DNA (1662bp) protein (554aa)
Protein translocase subunit SecA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4H8_GEMAT
secA; preprotein translocase SecA subunit; K03070 preprotein translocase subunit SecA Tax=RBG_16_Gemmatimonadetes_66_8_curated
Protein translocase subunit secA
13_1_20cm_2_scaffold_3315_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1670..2230)
DNA (561bp) protein (187aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RBG_16_Gemmatimonadetes_66_8_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=NADD_ROSS1
13_1_20cm_2_scaffold_3315_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2236..3000)
DNA (765bp) protein (255aa)
transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A004
hypothetical protein; K05807 putative lipoprotein Tax=GWC2_Gemmatimonadetes_71_10_curated
outer membrane assembly lipoprotein YfiO
13_1_20cm_2_scaffold_3315_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2997..3911)
DNA (915bp) protein (305aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_3315_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3908..4666)
DNA (759bp) protein (253aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
TPR repeat-containing protein alias=ACD73_C00227G00003,ACD73_47771.3162.6G0003,ACD73_47771.3162.6_3 id=109566 tax=ACD73 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_desc=Unknown
hypothetical protein
13_1_20cm_2_scaffold_3315_6
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4650..5621)
DNA (972bp) protein (324aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Proteobacteria bacterium CAG:495 RepID=R5QPQ9_9PROT
NAD-dependent epimerase/dehydratase Tax=GWA2_Deltaproteobacteria_65_63_curated
NAD-dependent epimerase/dehydratase
13_1_20cm_2_scaffold_3315_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5618..6553)
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase family protein; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=GWC2_Gemmatimonadetes_71_10_curated
NAD-dependent epimerase/dehydratase family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2V1_CALAS
NAD-dependent epimerase/dehydratase
13_1_20cm_2_scaffold_3315_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6538..7524)
DNA (987bp) protein (329aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2C4K0_9BACT
nucleotide sugar dehydrogenase
13_1_20cm_2_scaffold_3315_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7792..8802)
DNA (1011bp) protein (337aa)
UDP-N-acetyl-D-mannosaminuronate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W5_GEMAT
nucleotide-sugar dehydrogenase Tax=GWC2_Gemmatimonadetes_71_10_curated
nucleotide sugar dehydrogenase
13_1_20cm_2_scaffold_3315_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9061..9876)
DNA (816bp) protein (272aa)
Oxidoreductase domain protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NXC2_GRAMM alias=16ft_combo_ws3_scaffold_92_33 id=5225809 tax=16ft_combo_ws3 species=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative dehydrogenase
13_1_20cm_2_scaffold_3315_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9998..11113)
DNA (1116bp) protein (372aa)
Aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I2_GEMAT
aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_20cm_2_scaffold_3315_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11110..11700)
DNA (591bp) protein (197aa)
Transferase hexapeptide repeat n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCQ8_DICT6
transferase hexapeptide repeat containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
transferase hexapeptide repeat
13_1_20cm_2_scaffold_3315_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11700..12533)
DNA (834bp) protein (278aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.3.1.98)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Bacillus sp. 123MFChir2 RepID=UPI0003660A98
13_1_20cm_2_scaffold_3315_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12602..15886)
DNA (3285bp) protein (1095aa)
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Carbamoyl-phosphate synthase large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=CARB_GEMAT
Carbamoyl-phosphate synthase large subunit glutamine-dependent
13_1_20cm_2_scaffold_3315_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15870..16817)
DNA (948bp) protein (316aa)
Putative GDP-6-deoxy-D-lyxo-4-hexulose reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I6_GEMAT
putative GDP-6-deoxy-D-lyxo-4-hexulose reductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NAD-dependent epimerase/dehydratase
13_1_20cm_2_scaffold_3315_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16826..17845)
DNA (1020bp) protein (340aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Gemmatimonadetes_66_8_curated
GDP-mannose 4,6-dehydratase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GCC8_CHLAD rbh
GDP-mannose 4,6-dehydratase
13_1_20cm_2_scaffold_3315_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


17866..18057
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Actinomyces sp. ph3 RepID=UPI00034CAC0F
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L28
13_1_20cm_2_scaffold_3315_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(18113..18469)
DNA (357bp) protein (119aa)
50S ribosomal protein L17 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL17_GEMAT
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L17
13_1_20cm_2_scaffold_3315_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18469..19542)
DNA (1074bp) protein (358aa)
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J0_GEMAT
DNA-directed RNA polymerase subunit alpha
13_1_20cm_2_scaffold_3315_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(19539..20174)
DNA (636bp) protein (212aa)
30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J1_GEMAT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S4
13_1_20cm_2_scaffold_3315_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(20178..20567)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J2_GEMAT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsK; 30S ribosomal protein S11
13_1_20cm_2_scaffold_3315_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(20568..20951)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS13_GEMAT
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein S13
13_1_20cm_2_scaffold_3315_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21148..21552)
DNA (405bp) protein (135aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_3315_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21549..22229)
DNA (681bp) protein (227aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23) Tax=RBG_16_Gemmatimonadetes_66_8_curated
Orotidine 5'-phosphate decarboxylase n=1 Tax=Spiribacter salinus M19-40 RepID=R4V701_9GAMM
orotidine-5'-phosphate decarboxylase
13_1_20cm_2_scaffold_3315_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22222..23109)
DNA (888bp) protein (296aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydroorotate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J6_GEMAT
Dihydroorotate dehydrogenase
Displaying 25 items

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