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13_1_40cm_3_scaffold_5048

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5048_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(14..550)
DNA (537bp) protein (179aa)
Probable GTP-binding protein EngB n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHB3_9ACTN
ribosome biogenesis GTP-binding protein YsxC Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ysxC; ribosome biogenesis GTP-binding protein YsxC
13_1_40cm_3_scaffold_5048_2
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

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comp(580..1677)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003658ED9
group 1 glycosyl transferase
Tax=BJP_IG2069_Ignavibacteriae_38_11
13_1_40cm_3_scaffold_5048_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(1710..2918)
DNA (1209bp) protein (403aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB47_GEMAT
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ATP-dependent Clp protease ATP-binding subunit clpX
13_1_40cm_3_scaffold_5048_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(2958..3500)
DNA (543bp) protein (181aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB46_GEMAT
ATP-dependent Clp protease proteolytic subunit
13_1_40cm_3_scaffold_5048_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(3500..4783)
DNA (1284bp) protein (428aa)
Trigger factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB45_GEMAT
tig; trigger factor; K03545 trigger factor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Trigger factor
13_1_40cm_3_scaffold_5048_trna_1
unknown

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comp(4914..4995)
DNA (82bp)
transferRNA
13_1_40cm_3_scaffold_5048_6
unknown

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5064..5768
DNA (705bp) protein (235aa)

This feature has no annotations

13_1_40cm_3_scaffold_5048_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5819..6805
DNA (987bp) protein (329aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1)
13_1_40cm_3_scaffold_5048_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6802..8595
DNA (1794bp) protein (598aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_40cm_3_scaffold_5048_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8596..9186
DNA (591bp) protein (197aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c oxidase subunit III id=4393248 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit III
13_1_40cm_3_scaffold_5048_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9197..9499
DNA (303bp) protein (101aa)
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome C oxidase subunit IV
13_1_40cm_3_scaffold_5048_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9538..10119
DNA (582bp) protein (194aa)
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein {ECO:0000313|EMBL:AHG89948.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative CtaG protein id=4885219 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying 12 items

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