ggKbase home page

13_1_40cm_3_scaffold_5101

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5101_1
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

1..732
DNA (732bp) protein (244aa)
rhlE; ATP-dependent RNA helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=RBG_16_Acidobacteria_68_9_curated
ATP-dependent RNA helicase RhlE n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXJ0_JANMA
rhlE; ATP-dependent RNA helicase
13_1_40cm_3_scaffold_5101_2
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(796..1089)
DNA (294bp) protein (98aa)
GYD domain superfamily Tax=RBG_16_KB1_OP1_55_9_curated
hypothetical protein id=14425974 bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
13_1_40cm_3_scaffold_5101_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1095..2327)
DNA (1233bp) protein (411aa)
gltA; citrate synthase (EC:2.3.3.1) id=14430702 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
citrate synthase I; K01647 citrate synthase [EC:2.3.3.1] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
gltA; citrate synthase (EC:2.3.3.1)
13_1_40cm_3_scaffold_5101_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2451..3101
DNA (651bp) protein (217aa)
Phosphoribosyltransferase n=1 Tax=Streptomyces sp. Mg1 RepID=B4UYQ8_9ACTO
Putative phosphoribosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_3_scaffold_5101_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3613..5478)
DNA (1866bp) protein (622aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Acyl-CoA dehydrogenase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNS1_9ACTO id=5225245 bin=16ft_combo_ws3_JS1 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_3_scaffold_5101_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5545..8331
DNA (2787bp) protein (929aa)
Peptidase M16 domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE46_RHOMR rbh
peptidase M16 domain-containing protein rbh
Peptidase M16 domain protein {ECO:0000313|EMBL:AEN72038.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
13_1_40cm_3_scaffold_5101_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8416..8631)
DNA (216bp) protein (72aa)
hypothetical protein
Putative intramembrane serine protease id=2322384 bin=GWA2_Methylomirabilis_73_35 species=Bacillus halodurans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
intramembrane serine protease Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_3_scaffold_5101_8
RIFOXYB2_FULL_Elusimicrobia_62_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(8631..9140)
DNA (510bp) protein (170aa)
rhomboid protease gluP-like Tax=RIFOXYB2_FULL_Elusimicrobia_62_6_curated
Rhomboid family protein id=4206000 bin=GWA2_Elusimicrobia_69_24 species=Halobacillus sp. BAB-2008 genus=Halobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_40cm_3_scaffold_5101_9
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(9137..9763)
DNA (627bp) protein (209aa)
hypothetical protein
Putative uncharacterized protein id=4206001 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Putative uncharacterized protein Tax=GWA2_Elusimicrobia_69_24_curated
13_1_40cm_3_scaffold_5101_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

10034..11320
DNA (1287bp) protein (429aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Amidohydrolase id=4817215 bin=GWC2_Ignavibacteria_56_12 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
amidohydrolase
13_1_40cm_3_scaffold_5101_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11320..13821
DNA (2502bp) protein (834aa)
LmbE family protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFK8_9BACT
LmbE family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
LmbE family protein
13_1_40cm_3_scaffold_5101_12
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13811..14851
DNA (1041bp) protein (347aa)
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein n=1 Tax=Desmospora sp. 8437 RepID=F5SGB3_9BACL
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein {ECO:0000313|EMBL:EGK11085.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae;
extracellular solute-binding protein
13_1_40cm_3_scaffold_5101_13
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

14848..15807
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000381924B
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RBG_16_RIF_CHLX_72_14_curated
ABC transporter related protein
13_1_40cm_3_scaffold_5101_14
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15946..16992
DNA (1047bp) protein (349aa)
ABC superfamily ATP binding cassette transporter permease n=1 Tax=Desmospora sp. 8437 RepID=F5SGB0_9BACL
ABC superfamily ATP binding cassette transporter permease {ECO:0000313|EMBL:EGK11082.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="
binding-protein-dependent transport system inner membrane protein
Displaying 14 items

View Taxonomy