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13_1_40cm_3_scaffold_1944

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1944_1
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..278)
DNA (276bp) protein (92aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67KX5_SYMTH
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:BAD41671.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbioba
13_1_40cm_3_scaffold_1944_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(322..1650)
DNA (1329bp) protein (443aa)
Oxidoreductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP74_KORVE
oxidoreductase domain protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AHG92323.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1944_trna_1
unknown

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comp(1723..1795)
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_1944_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1999..2718
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D2514
methyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
methyltransferase
13_1_40cm_3_scaffold_1944_4

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comp(2715..5774)
DNA (3060bp) protein (1020aa)
TonB-dependent receptor n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB93_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AGH13559.1}; TaxID=1256902 species="Bacteria.;" source="bacterium symbiont of Plakortis simplex pPS11G3.;"
hypothetical protein
13_1_40cm_3_scaffold_1944_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5865..7592
DNA (1728bp) protein (576aa)
DNA polymerase III n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B62325
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
PHP-like protein
13_1_40cm_3_scaffold_1944_6
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(7569..8210)
DNA (642bp) protein (214aa)
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7S7_SPHTD
13_1_40cm_3_scaffold_1944_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(8207..8605)
DNA (399bp) protein (133aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_40cm_3_scaffold_1944_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(8575..9264)
DNA (690bp) protein (230aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_1_40cm_3_scaffold_1944_9
unknown

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comp(9267..9476)
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_3_scaffold_1944_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(9521..9823)
DNA (303bp) protein (101aa)
30S ribosomal protein S16 n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CG77_9BACT
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
30S ribosomal protein S16
13_1_40cm_3_scaffold_1944_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10010..11308
DNA (1299bp) protein (433aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY5_GEMAT
protein of unknown function DUF445
Uncharacterized protein {ECO:0000313|EMBL:AHG91366.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1944_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(11225..12460)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_1944_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12448..13542)
DNA (1095bp) protein (365aa)
ATPase AAA-2 domain protein n=1 Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SMC2_THEAH
AAA ATPase central domain protein
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_1944_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(13546..14343)
DNA (798bp) protein (266aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_1_40cm_3_scaffold_1944_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(14333..15130)
DNA (798bp) protein (266aa)
rRNA methyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QG1_SYMTH
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase (SpoU)
13_1_40cm_3_scaffold_1944_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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15179..16006
DNA (828bp) protein (276aa)
Phosphomethylpyrimidine kinase (ThiD) n=2 Tax=Thermus thermophilus RepID=Q5SKG3_THET8
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphomethylpyrimidine kinase ThiD
13_1_40cm_3_scaffold_1944_17
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(16008..17045)
DNA (1038bp) protein (346aa)
Putative membrane associated hydrolase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A376_MELRP id=5223974 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
membrane associated hydrolase Tax=RBG_16_Ignavibacteria_34_14_curated
membrane associated hydrolase
Displaying 18 items

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