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13_1_40cm_3_scaffold_4160

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_4160_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..357)
DNA (357bp) protein (119aa)
aromatic acid decarboxylase (EC:4.1.1.-); K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Aromatic acid decarboxylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB74_GEMAT
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
13_1_40cm_3_scaffold_4160_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(499..1410)
DNA (912bp) protein (304aa)
ubiA; 4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB75_GEMAT
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_3_scaffold_4160_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1411..2904)
DNA (1494bp) protein (498aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB76_GEMAT rbh
menaquinone biosynthesis decarboxylase, SCO4490 family
Menaquinone biosynthesis decarboxylase, SCO4490 family {ECO:0000313|EMBL:AHG91443.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_4160_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2891..3550)
DNA (660bp) protein (220aa)
ubiE; menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimon
Demethylmenaquinone methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB77_GEMAT
13_1_40cm_3_scaffold_4160_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

3633..4190
DNA (558bp) protein (186aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB78_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
13_1_40cm_3_scaffold_4160_6
unknown

Not on your lists

4225..4467
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_3_scaffold_4160_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(4464..5204)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB82_GEMAT
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_3_scaffold_4160_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5205..6491)
DNA (1287bp) protein (429aa)
Putative multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB83_GEMAT
putative multidrug resistance protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
MATE efflux family protein
13_1_40cm_3_scaffold_4160_9
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6559..7131)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003683974
protein serine/threonine phosphatase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
protein serine/threonine phosphatase
13_1_40cm_3_scaffold_4160_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7205..7507)
DNA (303bp) protein (101aa)
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KCZ71458.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae;
Putative anti-sigma regulatory factor, serine/threonine protein kinase id=4927123 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative anti-sigma regulatory factor serine/threonine protein kinase
13_1_40cm_3_scaffold_4160_11
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7500..7898)
DNA (399bp) protein (133aa)
Antagonist protein RsbS id=4337252 bin=GWC2_Ignavibacteria_56_12 species=Mycobacterium xenopi genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbS; sigma activity regulator
13_1_40cm_3_scaffold_4160_12
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7926..8852)
DNA (927bp) protein (309aa)
Anti-sigma-factor antagonist id=4927121 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
anti-sigma-factor antagonist
13_1_40cm_3_scaffold_4160_13
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8879..9355)
DNA (477bp) protein (159aa)
pleD; pleD gene product; K02488 two-component system, cell cycle response regulator id=12554452 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GAF sensor-containing diguanylate cyclase
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:ADU50854.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;"
13_1_40cm_3_scaffold_4160_14
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9352..10239)
DNA (888bp) protein (296aa)
Two-component hybrid sensor and regulator n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89EQ6_BRADU
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
two-component hybrid sensor and regulator
13_1_40cm_3_scaffold_4160_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10232..11455)
DNA (1224bp) protein (408aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_3_scaffold_4160_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12538..13575)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB85_GEMAT
hypothetical protein; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphoesterase RecJ domain protein
13_1_40cm_3_scaffold_4160_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13677..15197)
DNA (1521bp) protein (507aa)
Amino acid permease-associated region n=1 Tax=Burkholderia sp. RPE64 RepID=R4WLR7_9BURK
amino acid transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amino acid permease-associated region
13_1_40cm_3_scaffold_4160_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15293..16183)
DNA (891bp) protein (297aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB87_GEMAT
IMP dehydrogenase
Displaying 18 items

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