ggKbase home page

13_1_40cm_scaffold_17239

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_17239_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..804)
DNA (804bp) protein (268aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isoleucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A881_GEMAT
Isoleucyl-tRNA synthetase
13_1_40cm_scaffold_17239_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(808..1395)
DNA (588bp) protein (196aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A880_GEMAT
13_1_40cm_scaffold_17239_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1562..2029)
DNA (468bp) protein (156aa)
Septum site-determining protein DivIVA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A879_GEMAT
divIVA; septum site-determining protein DivIVA; K04074 cell division initiation protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
protein of unknown function UPF0001
13_1_40cm_scaffold_17239_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2026..2691)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TD72_9DELT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_17239_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2718..3515)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3ENQ9_CHLPB
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Protein of unknown function DUF2723
13_1_40cm_scaffold_17239_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3515..4900)
DNA (1386bp) protein (462aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative uncharacterized protein id=1249914 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
13_1_40cm_scaffold_17239_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4953..5753)
DNA (801bp) protein (267aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A876_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Conserved hypothetical protein CHP00159
13_1_40cm_scaffold_17239_8
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5750..6916)
DNA (1167bp) protein (389aa)
folP; dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SU87_9DELT
Dihydropteroate synthase protein {ECO:0000313|EMBL:ERK92285.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" sourc
13_1_40cm_scaffold_17239_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6913..8001)
DNA (1089bp) protein (363aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
MacB-like periplasmic core domain protein
Uncharacterized protein id=2152388 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
13_1_40cm_scaffold_17239_10
unknown

Not on your lists

8288..8491
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_scaffold_17239_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9051..9749)
DNA (699bp) protein (233aa)
ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AHG93527.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ABC transporter related, ATP binding protein id=4913300 bin=GWA2_Ignavibacteria_55_11 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
13_1_40cm_scaffold_17239_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9799..11070)
DNA (1272bp) protein (424aa)
acriflavin resistance protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B397BF
RND family efflux pump membrane fusion protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
efflux transporter, RND family, MFP subunit
13_1_40cm_scaffold_17239_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11067..11849)
DNA (783bp) protein (261aa)
ftsH; ATP-dependent protease FtsH (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITH5_RHOCS
peptidase M41 FtsH domain protein
13_1_40cm_scaffold_17239_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12419..13477
DNA (1059bp) protein (353aa)
similar to 26S proteasome regulatory subunit Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_17239_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13437..14867)
DNA (1431bp) protein (477aa)
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPV5_GEOS8
tRNA(Ile)-lysidine synthetase
Displaying 15 items

View Taxonomy