ggKbase home page

13_1_40cm_scaffold_2000

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2000_1
unknown

Not on your lists

comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_2000_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(313..690)
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP n=1 Tax=Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) RepID=E6X0B4_NITSE
endoribonuclease l-psp; K07567 TdcF protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
endoribonuclease l-psp
13_1_40cm_scaffold_2000_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(690..2375)
DNA (1686bp) protein (562aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
13_1_40cm_scaffold_2000_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2372..3052)
DNA (681bp) protein (227aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Hydrolase, TatD family n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0K2_HALOH
hydrolase, TatD family
13_1_40cm_scaffold_2000_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3145..4161)
DNA (1017bp) protein (339aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT
SecF protein
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2000_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4161..5786)
DNA (1626bp) protein (542aa)
Protein translocase subunit SecD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECD_GEMAT
secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SecD export membrane protein
13_1_40cm_scaffold_2000_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5796..6701)
DNA (906bp) protein (302aa)
ribF; riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=379066 species="Bacteria; Gemmatimonad
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P1_GEMAT
13_1_40cm_scaffold_2000_8
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6698..7543)
DNA (846bp) protein (282aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RBG_13_Deltaproteobacteria_60_28_curated
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037CD54A
tRNA pseudouridine synthase B
13_1_40cm_scaffold_2000_9
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(7558..7914)
DNA (357bp) protein (119aa)
Ribosome-binding factor A n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RBFA_SYMTH
ribosome-binding factor A
ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_40cm_scaffold_2000_10
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

Not on your lists

comp(7916..8191)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W30_SOLUE
protein of unknown function DUF503; K09764 hypothetical protein Tax=RBG_16_RIF05_58_8_curated
hypothetical protein
13_1_40cm_scaffold_2000_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8194..9105)
DNA (912bp) protein (304aa)
Translation initiation factor IF-2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N8_GEMAT
initiation factor 2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2000_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9098..10780)
DNA (1683bp) protein (561aa)
Translation initiation factor IF-2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N8_GEMAT
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
13_1_40cm_scaffold_2000_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10808..11107)
DNA (300bp) protein (100aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N7_GEMAT
ribosomal protein L7Ae/L30e/S12e/Gadd45
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_2000_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11104..12462)
DNA (1359bp) protein (453aa)
Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N6_GEMAT
nusA; transcription elongation protein NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
nusA; transcription elongation protein NusA
13_1_40cm_scaffold_2000_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12462..12962)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003764ECE
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosome maturation factor rimP
13_1_40cm_scaffold_2000_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12919..13653)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N4_GEMAT
hypothetical protein; K05810 conserved hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_2000_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13712..14938)
DNA (1227bp) protein (409aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2L3J3_9RHIZ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_scaffold_2000_18
unknown

Not on your lists

15001..16173
DNA (1173bp) protein (391aa)

This feature has no annotations

13_1_40cm_scaffold_2000_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

16173..16586
DNA (414bp) protein (138aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_scaffold_2000_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16607..17245
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N1_GEMAT
phospholipase C/P1 nuclease
Phospholipase C/P1 nuclease {ECO:0000313|EMBL:AHG90718.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_2000_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

17217..17447
DNA (231bp) protein (77aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_scaffold_2000_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17444..18874)
DNA (1431bp) protein (477aa)
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Gem
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N0_GEMAT
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
13_1_40cm_scaffold_2000_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18871..20232)
DNA (1362bp) protein (454aa)
gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Gem
gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M9_GEMAT
13_1_40cm_scaffold_2000_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20458..22731)
DNA (2274bp) protein (758aa)
ATP-dependent DNA helicase (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent DNA helicase PcrA n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CR29_DESK7
ATP-dependent DNA helicase PcrA
13_1_40cm_scaffold_2000_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22728..23906)
DNA (1179bp) protein (393aa)
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M6_GEMAT
two-component histidine kinase Tax=GWC2_Gemmatimonadetes_71_10_curated
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_2000_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23881..25137)
DNA (1257bp) protein (419aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Serine--tRNA ligase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDI4_9FIRM
Seryl-tRNA synthetase
13_1_40cm_scaffold_2000_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25141..25701)
DNA (561bp) protein (187aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_2000_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25797..26150
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M3_GEMAT
hypothetical protein; K07131 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_2000_29
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

26166..26564
DNA (399bp) protein (133aa)
Two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M2_GEMAT
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:BAH38582.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (
13_1_40cm_scaffold_2000_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26561..27571
DNA (1011bp) protein (337aa)
manC; putative mannose-1-phosphate guanylyltransferase (EC:2.7.7.13); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative mannose-1-phosphate guanylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8M1_GEMAT
Nucleotidyl transferase
Displaying items 1-30 of 32 in total

View Taxonomy