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13_1_40cm_scaffold_4818

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4818_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2..1669)
DNA (1668bp) protein (556aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K2_GEMAT
ccmF; cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF Tax=RBG_16_Gemmatimonadetes_66_8_curated
ccmF; cytochrome c-type biogenesis protein CcmF
13_1_40cm_scaffold_4818_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1670..2005)
DNA (336bp) protein (112aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K1_GEMAT
ccmE; cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE Tax=GWC2_Gemmatimonadetes_71_10_curated
CcmE/CycJ protein
13_1_40cm_scaffold_4818_3

Not on your lists

comp(2013..2480)
DNA (468bp) protein (156aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SIR4_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL56050.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
hypothetical protein
13_1_40cm_scaffold_4818_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2477..3952)
DNA (1476bp) protein (492aa)
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" so
Glycerol kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6K0_GEMAT
13_1_40cm_scaffold_4818_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3949..4974)
DNA (1026bp) protein (342aa)
initiation factor 2B related family protein; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Methylthioribose-1-phosphate isomerase n=1 Tax=planctomycete KSU-1 RepID=I3IIW2_9PLAN
translation initiation factor 2B subunit
13_1_40cm_scaffold_4818_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

5100..5882
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Short chain enoyl-CoA hydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T70_SOLUE
Enoyl-CoA hydratase/isomerase
13_1_40cm_scaffold_4818_7
unknown

Not on your lists

5999..6223
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_scaffold_4818_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

6678..7775
DNA (1098bp) protein (366aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA gyrase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J5_GEMAT
DNA gyrase B subunit
13_1_40cm_scaffold_4818_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

7956..8390
DNA (435bp) protein (145aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6J5_GEMAT
13_1_40cm_scaffold_4818_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8387..9724)
DNA (1338bp) protein (446aa)
pdp; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:BAH37835.1}; EC=2.4.2.2 {ECO:0000313|EMBL:BAH37835.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gem
Pyrimidine-nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H5_GEMAT
13_1_40cm_scaffold_4818_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

9731..10519
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H4_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_4818_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10526..11311
DNA (786bp) protein (262aa)
Sensor histidine kinase/response regulator n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D3G7_MYXXD
sensor histidine kinase/response regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
sensor histidine kinase/response regulator
13_1_40cm_scaffold_4818_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

11308..13317
DNA (2010bp) protein (670aa)
ligA; NAD(+)-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
DNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=DNLJ_GEMAT
DNA ligase
13_1_40cm_scaffold_4818_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13330..13869
DNA (540bp) protein (180aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_4818_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13927..15288)
DNA (1362bp) protein (454aa)
peptidase U62 modulator of DNA gyrase; K03592 PmbA protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Peptidase U62, modulator of DNA gyrase id=2026682 bin=GWD2_Chloroflexi_49_16 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
peptidase U62 modulator of DNA gyrase
13_1_40cm_scaffold_4818_16
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(15285..16664)
DNA (1380bp) protein (460aa)
Peptidase id=2037494 bin=GWB2_Chloroflexi_49_20 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
peptidase U62 modulator of DNA gyrase; K03568 TldD protein Tax=GWC2_Chloroflexi_49_37_curated
peptidase U62 modulator of DNA gyrase
13_1_40cm_scaffold_4818_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16661..17158)
DNA (498bp) protein (166aa)
Purine phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6H0_GEMAT
purine phosphoribosyltransferase; K07101 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
phosphoribosyltransferase
13_1_40cm_scaffold_4818_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17175..17699
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G9_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide TPR_2 repeat-containing protein
13_1_40cm_scaffold_4818_19
unknown

Not on your lists

17708..18388
DNA (681bp) protein (227aa)

This feature has no annotations

13_1_40cm_scaffold_4818_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

18385..20229
DNA (1845bp) protein (615aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
AMP-dependent synthetase and ligase
fadD; Long-chain acyl-CoA synthetase id=16791950 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
13_1_40cm_scaffold_4818_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20226..20855)
DNA (630bp) protein (210aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_4818_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(20855..21553)
DNA (699bp) protein (233aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G3_GEMAT
putative oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_4818_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21550..21987)
DNA (438bp) protein (146aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GTP cyclohydrolase 1 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6G2_GEMAT
GTP cyclohydrolase 1
13_1_40cm_scaffold_4818_24
unknown

Not on your lists

comp(21984..22094)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_40cm_scaffold_4818_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

22133..23335
DNA (1203bp) protein (401aa)
Sodium/calcium exchanger membrane region n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CF48_THET1 id=5225356 bin=16ft_combo_ws3_JS1 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sodium/calcium exchanger membrane region; K07301 inner membrane protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
sodium/calcium exchanger membrane region
13_1_40cm_scaffold_4818_26
unknown

Not on your lists

23580..23711
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_scaffold_4818_27
Schistosoma japonicum, Schistosoma, Strigeidida, Digenea, Platyhelminthes, Metazoa

Not on your lists

23708..24025
DNA (318bp) protein (106aa)
Cupin, RmlC-type,domain-containing protein n=1 Tax=Schistosoma japonicum RepID=C1L6U9_SCHJA
Cupin, RmlC-type,domain-containing protein {ECO:0000313|EMBL:CAX70427.1}; TaxID=6182 species="Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae;
Cupin 2 conserved barrel domain protein
13_1_40cm_scaffold_4818_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(24022..24327)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6F9_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
Displaying 28 items

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