ggKbase home page
Advanced Search
Search Help

13_1_40CM_2_Gemmatimonadetes_60_3

In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  gemmatimonadetes_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 2.82 Longest contig: 8.80 Kbp Bin length: 1.97 Mbp GC content: 59.98 %
Contigs count: 1121 Features count: 2468 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 40 / 55 MC: 4 BSCG 33 / 51 MC: 3 ASCG 8 / 38 MC: 2
Displaying items 701-750 of 1121 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_219998
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1294 bp 59.58 3.25 89.95
13_1_40cm_2_scaffold_615570
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1195 bp 61.92 1.38 56.74
13_1_40cm_2_scaffold_538056
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1210 bp 60.33 4.77 58.02
13_1_40cm_2_scaffold_345588
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1019 bp 62.22 2.21 100.39
13_1_40cm_2_scaffold_75406
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2183 bp 60.15 2.95 94.14
13_1_40cm_2_scaffold_169628
Species: Mizugakiibacter sediminis (50%)
2 1468 bp 57.43 3.88 38.22
13_1_40cm_2_scaffold_79274
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2133 bp 62.49 2.67 68.50
13_1_40cm_2_scaffold_505608
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1144 bp 60.75 2.10 86.28
13_1_40cm_2_scaffold_113864
Species: Gemmatimonas aurantiaca (50%)
2 1789 bp 59.59 3.35 89.71
13_1_40cm_2_scaffold_178759
Species: Pyrinomonas methylaliphatogenes (50%)
2 1431 bp 59.68 1.99 72.75
13_1_40cm_2_scaffold_59429
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2439 bp 61.17 3.26 99.75
13_1_40cm_2_scaffold_299028
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1109 bp 57.71 2.71 83.86
13_1_40cm_2_scaffold_335179
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1041 bp 60.33 1.87 94.52
13_1_40cm_2_scaffold_288661
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1128 bp 59.49 2.39 94.68
13_1_40cm_2_scaffold_270501
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1165 bp 61.97 2.06 97.34
13_1_40cm_2_scaffold_329002
Species: RBG_16_Acidobacteria_70_10_curated (50%)
2 1707 bp 59.05 2.55 54.31
13_1_40cm_2_scaffold_165759
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1484 bp 61.46 4.25 94.41
13_1_40cm_2_scaffold_494009
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1284 bp 61.14 2.69 60.28
13_1_40cm_2_scaffold_329003
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1053 bp 58.69 3.28 99.72
13_1_40cm_2_scaffold_180836
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2255 bp 60.35 5.25 37.65
13_1_40cm_2_scaffold_85666
Species: R_Gemmatimonadetes_71_11 (50%)
2 2055 bp 58.54 2.26 98.83
13_1_40cm_2_scaffold_262398
Species: R_Acidobacteria_68_18 (50%)
2 1183 bp 61.88 1.65 79.12
13_1_40cm_2_scaffold_282400
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1140 bp 62.37 1.97 96.32
13_1_40cm_2_scaffold_449704
Species: R_Gemmatimonadetes_71_11 (50%)
2 1149 bp 57.27 2.74 80.68
13_1_40cm_2_scaffold_184734
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1410 bp 61.99 2.45 98.94
13_1_40cm_2_scaffold_65468
Species: R_Gemmatimonadetes_71_11 (50%)
2 2333 bp 58.51 3.86 95.54
13_1_40cm_2_scaffold_207566
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1331 bp 59.65 2.48 96.92
13_1_40cm_2_scaffold_82336
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 2094 bp 62.03 2.94 84.96
13_1_40cm_2_scaffold_287012
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1131 bp 61.01 2.12 100.27
13_1_40cm_2_scaffold_178538
Species: Gemmatimonas aurantiaca (50%)
2 1432 bp 59.50 4.40 61.38
13_1_40cm_2_scaffold_174658
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1447 bp 60.88 3.42 99.52
13_1_40cm_2_scaffold_318326
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1073 bp 60.11 3.36 98.97
13_1_40cm_2_scaffold_102514
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1883 bp 58.31 3.51 97.98
13_1_40cm_2_scaffold_319568
Species: Gemmatimonas aurantiaca (50%)
2 1071 bp 60.32 4.48 100.28
13_1_40cm_2_scaffold_265315
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1176 bp 59.35 2.81 100.51
13_1_40cm_2_scaffold_32424
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 3207 bp 58.87 3.41 89.24
13_1_40cm_2_scaffold_155877
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1529 bp 62.26 1.67 100.07
13_1_40cm_2_scaffold_209250
Species: R_Acidobacteria_61_28 (50%)
2 1326 bp 57.77 2.60 102.49
13_1_40cm_2_scaffold_301915
Species: Rhodovulum sulfidophilum (50%)
2 1103 bp 59.02 2.86 54.94
13_1_40cm_2_scaffold_256794
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1196 bp 59.62 2.01 98.08
13_1_40cm_2_scaffold_215407
Species: R_Acidobacteria_60_20 (50%)
2 1307 bp 57.61 3.79 101.68
13_1_40cm_2_scaffold_239349
Species: R_Acidobacteria_65_29 (50%)
2 1240 bp 61.69 2.42 77.66
13_1_40cm_2_scaffold_261827
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1184 bp 61.99 2.03 90.71
13_1_40cm_2_scaffold_18131
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 4113 bp 61.00 2.52 85.19
13_1_40cm_2_scaffold_235707
Species: RBG_16_Zixibacteria_53_22_curated (50%)
2 1250 bp 61.28 3.84 91.68
13_1_40cm_2_scaffold_314253
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1080 bp 58.06 1.11 100.00
13_1_40cm_2_scaffold_145622
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1581 bp 61.67 1.99 64.52
13_1_40cm_2_scaffold_150888
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1554 bp 62.23 3.19 99.03
13_1_40cm_2_scaffold_322340
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1066 bp 62.10 1.41 85.27
13_1_40cm_2_scaffold_271589
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1162 bp 60.93 2.19 100.17
Displaying items 701-750 of 1121 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.