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13_1_40cm_scaffold_993

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_993_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(1..1305)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000364C474
oligosaccharide translocase Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
oligosaccharide translocase
13_1_40cm_scaffold_993_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1298..2254)
DNA (957bp) protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;"
Bifunctional polymyxin resistance protein ArnA (EC:4.1.1.35 2.1.2.9)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GQP4_CLOSY
13_1_40cm_scaffold_993_3
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(2251..3180)
DNA (930bp) protein (310aa)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) (EC:2.6.1.-) Tax=GWA1_Bdellovibrionales_52_35_curated
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) (EC:2.6.1.-)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (UDP-(Beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase) id=3462178 bin=GWA1_Deltaproteobacteria_52_35 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
13_1_40cm_scaffold_993_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3177..5393)
DNA (2217bp) protein (739aa)
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase n=2 Tax=Geobacter metallireducens RepID=Q39W01_GEOMG
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase {ECO:0000313|EMBL:ABB31573.2}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae;
13_1_40cm_scaffold_993_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(5620..6792)
DNA (1173bp) protein (391aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5V9_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_993_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(6789..8321)
DNA (1533bp) protein (511aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W0_GEMAT
NtrC family two-component response regulator
NtrC family two-component response regulator {ECO:0000313|EMBL:BAH37620.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas
13_1_40cm_scaffold_993_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8646..11081
DNA (2436bp) protein (812aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W1_GEMAT
putative exopolysaccharide biosynthesis protein
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAH37621.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
13_1_40cm_scaffold_993_8
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11098..12021)
DNA (924bp) protein (308aa)
Putative Response regulator PleD n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1P9_9DELT
Putative Response regulator PleD {ECO:0000313|EMBL:EFK10304.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
diguanylate cyclase
13_1_40cm_scaffold_993_9
unknown

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12239..12514
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_scaffold_993_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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12516..14342
DNA (1827bp) protein (609aa)
glmS; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_7
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB63_GEMAT
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
13_1_40cm_scaffold_993_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

14347..15204
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5W2_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_993_12
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15207..15503)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XWS0_SORCE
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:KIG15468.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;
hypothetical protein
Displaying 12 items

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