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13_1_40cm_scaffold_3938

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3938_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3..428
DNA (426bp) protein (142aa)
UvrABC system protein B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRB_GEMAT
uvrB; UvrABC system protein B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UvrABC system protein B
13_1_40cm_scaffold_3938_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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391..798
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4G9_GEMAT
putative protein family UPF0079, ATPase
Uncharacterized protein {ECO:0000313|EMBL:AHG91097.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3938_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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953..1687
DNA (735bp) protein (245aa)
Peptidase M22, glycoprotease n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJ71_SYNFM
peptidase M22 glycoprotease Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidase M22, glycoprotease
13_1_40cm_scaffold_3938_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2134..2613
DNA (480bp) protein (160aa)
Single-stranded DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4G5_GEMAT
ssb; single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ssb; single-strand binding protein
13_1_40cm_scaffold_3938_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2585..3853
DNA (1269bp) protein (423aa)
LysM domain-containing protein id=7200269 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
peptidoglycan-binding LysM
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_3938_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3896..4690
DNA (795bp) protein (265aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Cytochrome c-type biogenesis protein CcsB id=4800841 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_3938_7
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

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4709..5965
DNA (1257bp) protein (419aa)
Glutamyl-tRNA reductase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q3J0_9FIRM
glutamyl-tRNA reductase
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_40cm_scaffold_3938_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5962..6906
DNA (945bp) protein (315aa)
nucleoside-diphosphate-sugar epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4G3_GEMAT
nucleoside-diphosphate-sugar epimerase
13_1_40cm_scaffold_3938_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6910..7623
DNA (714bp) protein (238aa)
Putative biopolymer transport protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4G2_GEMAT
putative biopolymer transport protein; K03562 biopolymer transport protein TolQ Tax=RBG_16_Gemmatimonadetes_66_8_curated
MotA/TolQ/ExbB proton channel
13_1_40cm_scaffold_3938_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7623..8069
DNA (447bp) protein (149aa)
Putative biopolymer transport protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4G1_GEMAT
putative biopolymer transport protein; K03559 biopolymer transport protein ExbD Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative biopolymer transport protein
13_1_40cm_scaffold_3938_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8066..8752
DNA (687bp) protein (229aa)
TonB domain-containing protein
Putative periplasmic protein TonB Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative periplasmic protein TonB id=4018762 bin=GWA2_Elusimicrobia_69_24 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_40cm_scaffold_3938_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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8764..10116
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F9_GEMAT
hypothetical protein; K03641 TolB protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
WD40-like beta Propeller containing protein
13_1_40cm_scaffold_3938_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10136..10759
DNA (624bp) protein (208aa)
Putative peptidoglycan-associated lipoprotein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F8_GEMAT
pal; putative peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
peptidoglycan-associated lipoprotein
13_1_40cm_scaffold_3938_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10773..11561
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F7_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetratricopeptide repeat-containing protein
13_1_40cm_scaffold_3938_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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11574..13313
DNA (1740bp) protein (580aa)
Sec-independent protein translocase protein TatC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4F6_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Sec-independent protein translocase, TatC subunit
Displaying 15 items

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