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13_1_40cm_scaffold_6628

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_6628_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..703
DNA (702bp) protein (234aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein id=14627888 bin=bin7_NC10_sister species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_scaffold_6628_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

703..3234
DNA (2532bp) protein (844aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
pth:PTH_1538 CoxL; aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs id=1247861 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_scaffold_6628_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3224..3391)
DNA (168bp) protein (56aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_scaffold_6628_4

Not on your lists

3525..5111
DNA (1587bp) protein (529aa)
Beta-lactamase n=1 Tax=uncultured bacterium 270 RepID=E3T6T7_9BACT
Beta-lactamase {ECO:0000313|EMBL:ADC36031.1}; TaxID=698387 species="Bacteria; environmental samples.;" source="uncultured bacterium 270.;"
beta-lactamase
13_1_40cm_scaffold_6628_5
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(5113..5553)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI000366A482
Uncharacterized protein {ECO:0000313|EMBL:KHD79175.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
13_1_40cm_scaffold_6628_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5550..6089)
DNA (540bp) protein (180aa)
PadR family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
transcriptional regulator PadR family protein
PadR family transcriptional regulator id=1241986 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
13_1_40cm_scaffold_6628_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6198..6701
DNA (504bp) protein (168aa)
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain, putative n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3B0G9_9CAUL
Zinc carboxypeptidase {ECO:0000313|EMBL:CDM65730.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Zinc-dependent carboxypeptidase related domain containing protein
13_1_40cm_scaffold_6628_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

7780..8820
DNA (1041bp) protein (347aa)
deacylase/carboxypeptidase superfamily protein
Conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily, putative {ECO:0000313|EMBL:ABC46310.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incer
deacylase/carboxypeptidase superfamily protein id=24658596 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
13_1_40cm_scaffold_6628_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8852..9535)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003623659
htrA; putative serine protease HtrA Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_6628_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9793..10380)
DNA (588bp) protein (196aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_6628_11
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(10381..10920)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D14F6
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Acidobacteria_68_9_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_scaffold_6628_12
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

11114..12235
DNA (1122bp) protein (374aa)
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
hypothetical protein id=14428743 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_6628_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(12244..14655)
DNA (2412bp) protein (804aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=GWC2_Gemmatimonadetes_71_10_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q0_GEMAT
13_1_40cm_scaffold_6628_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

14726..16840
DNA (2115bp) protein (705aa)
Methyl-accepting chemotaxis sensory transducer with Cache sensor n=1 Tax=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) RepID=D1B7F3_THEAS
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein Tax=GWC2_Gemmatimonadetes_71_10_curated
methyl-accepting chemotaxis sensory transducer
13_1_40cm_scaffold_6628_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16851..18296)
DNA (1446bp) protein (482aa)
Putative D-3-phosphoglycerate dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2U9_9BACT
D-3-phosphoglycerate dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
serA; D-3-phosphoglycerate dehydrogenase
13_1_40cm_scaffold_6628_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18236..19456)
DNA (1221bp) protein (407aa)
Transaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4S4_GEMAT
transaminase Tax=RBG_16_Gemmatimonadetes_66_8_curated
aminotransferase class V
13_1_40cm_scaffold_6628_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(19453..20118)
DNA (666bp) protein (222aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isochorismatase hydrolase id=5800721 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
13_1_40cm_scaffold_6628_18
unknown

Not on your lists

comp(20192..20722)
DNA (531bp) protein (177aa)

This feature has no annotations

13_1_40cm_scaffold_6628_19
unknown

Not on your lists

comp(20787..21155)
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_40cm_scaffold_6628_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21790..22314)
DNA (525bp) protein (175aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Argininosuccinate lyase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=ARLY_ROSCS id=5225765 bin=16ft_combo_ws3_JS1 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
bifunctional argininosuccinate lyase/N-acetylglutamate synthase
13_1_40cm_scaffold_6628_21
unknown

Not on your lists

23023..23178
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_scaffold_6628_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23405..24169)
DNA (765bp) protein (255aa)
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Acetylglutamate kinase n=2 Tax=Chloroflexus RepID=ARGB_CHLAA
acetylglutamate kinase
13_1_40cm_scaffold_6628_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24267..25226)
DNA (960bp) protein (320aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_0015
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4N9_GEMAT
13_1_40cm_scaffold_6628_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25278..26336)
DNA (1059bp) protein (353aa)
quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Quinolinate phosphoribosyl transferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2Y5_CONWI
quinolinate phosphoribosyl transferase
13_1_40cm_scaffold_6628_25
unknown

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comp(26356..27249)
DNA (894bp) protein (298aa)

This feature has no annotations

13_1_40cm_scaffold_6628_26
unknown

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comp(27227..27571)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_scaffold_6628_27
Desulfohalobium retbaense, Desulfohalobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(27568..28170)
DNA (603bp) protein (201aa)
Glycosyl transferase family 2 n=1 Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X4F5_DESRD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACV69429.1}; TaxID=485915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfohalobium.;" source="Des
13_1_40cm_scaffold_6628_28
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

28349..29413
DNA (1065bp) protein (355aa)
Putative asparaginase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5P9_GEMAT
putative asparaginase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative asparaginase
13_1_40cm_scaffold_6628_29

Not on your lists

29550..30569
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI00039CF91F
Uncharacterized protein {ECO:0000313|EMBL:AIA10983.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_scaffold_6628_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(30633..31766)
DNA (1134bp) protein (378aa)
Saccharopine dehydrogenase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5N3_GEMAT
Saccharopine dehydrogenase
Saccharopine dehydrogenase {ECO:0000313|EMBL:AHG89937.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 39 in total

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