ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_191

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_191_1
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..713)
DNA (711bp) protein (237aa)
Putative permease Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MIB8_CORCM
macB1; putative permease
Putative permease {ECO:0000313|EMBL:AFE09297.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_b1_redo_sep16_scaffold_191_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1040..3493)
DNA (2454bp) protein (818aa)
Putative permease Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CAV6_MYXFH
permease
Permease {ECO:0000313|EMBL:AHG88486.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_191_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3486..5966)
DNA (2481bp) protein (827aa)
hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
permease
Permease {ECO:0000313|EMBL:AHG92954.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_191_4
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5959..8463)
DNA (2505bp) protein (835aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJG6_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC49136.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_65_b1_redo_sep16_scaffold_191_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8456..10885)
DNA (2430bp) protein (810aa)
Glr1418 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKQ9_GLOVI
permease
Permease {ECO:0000313|EMBL:AHG93762.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_191_6
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10878..13274)
DNA (2397bp) protein (799aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4L1_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC43098.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_65_b1_redo_sep16_scaffold_191_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13267..15708)
DNA (2442bp) protein (814aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4L1_MYXSD
permease
Permease {ECO:0000313|EMBL:AHG87869.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_191_8
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15701..18139)
DNA (2439bp) protein (813aa)
Permease Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXW4_OPITP
permease
Permease {ECO:0000313|EMBL:ACB75166.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_65_b1_redo_sep16_scaffold_191_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(18190..20622)
DNA (2433bp) protein (811aa)
Gll1201 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_191_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20706..20885)
DNA (180bp) protein (60aa)
ABC transporter Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037C73BE
ABC transporter related protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_191_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20885..21469)
DNA (585bp) protein (195aa)
ABC transporter related Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SG5_SOLUE
ABC transporter related protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_191_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(21526..22776)
DNA (1251bp) protein (417aa)
RND family efflux transporter MFP subunit Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWP8_CORCM
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_191_13
unknown

Not on your lists

comp(23171..23383)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_191_14
unknown

Not on your lists

comp(23417..24382)
DNA (966bp) protein (322aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_191_15
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24487..25320)
DNA (834bp) protein (278aa)
Retinol dehydrogenase (EC:1.1.1.105)
Retinol dehydrogenase {ECO:0000313|EMBL:AFZ31191.1}; EC=1.1.1.105 {ECO:0000313|EMBL:AFZ31191.1};; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
hypothetical protein Tax=Meiothermus timidus RepID=UPI000376B251
PLM4_65_b1_redo_sep16_scaffold_191_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25400..25726)
DNA (327bp) protein (109aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_191_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

25795..26643
DNA (849bp) protein (283aa)
id=12554707 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_191_18
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26662..27108)
DNA (447bp) protein (149aa)
PilT protein domain protein bin=GWA2_Methylomirabilis_73_35 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_191_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(27092..27382)
DNA (291bp) protein (97aa)
AbrB family transcription regulator bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_191_20
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

27698..29623
DNA (1926bp) protein (642aa)
Multi-sensor hybrid histidine kinase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM85_KORVE
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_191_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(29942..31795)
DNA (1854bp) protein (618aa)
Methylenetetrahydrofolate reductase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U0_GEMAT
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_191_22
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31792..35427)
DNA (3636bp) protein (1212aa)
B12-dependent methionine synthase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000363A892
Methionine synthase {ECO:0000313|EMBL:ACL71743.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
metH; B12-dependent methionine synthase
PLM4_65_b1_redo_sep16_scaffold_191_23
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

35859..36959
DNA (1101bp) protein (367aa)
Putative amino acid ABC transporter substrate binding protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A737_GEMAT
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_191_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

36959..38050
DNA (1092bp) protein (364aa)
Putative amino acid ABC transporter substrate binding protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A737_GEMAT
putative amino acid ABC transporter substrate binding protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_191_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

38047..39948
DNA (1902bp) protein (634aa)
Integral membrane sensor hybrid histidine kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XK45_9BACT
chemotaxis protein CheY
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_191_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

40043..41524
DNA (1482bp) protein (494aa)
Polyphosphate:AMP phosphotransferase Tax=Leptonema illini DSM 21528 RepID=H2CJS0_9LEPT
polyphosphate:AMP phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_191_27
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41535..41858
DNA (324bp) protein (108aa)
O(6)-alkylguanine repair protein YbaZ Tax=Thiothrix nivea DSM 5205 RepID=I3BNU2_9GAMM
O(6)-alkylguanine repair protein YbaZ {ECO:0000313|EMBL:EIJ33035.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
methylated-DNA-(protein)-cysteine S-methyltransferase
PLM4_65_b1_redo_sep16_scaffold_191_28
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41831..42745
DNA (915bp) protein (305aa)
Poly(3-hydroxybutyrate) depolymerase Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BP54_MYCCN
poly(3-hydroxybutyrate) depolymerase
Poly(3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:AFM19061.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
PLM4_65_b1_redo_sep16_scaffold_191_29
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

42812..44878
DNA (2067bp) protein (689aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDI5_RHOM4
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACY47178.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_b1_redo_sep16_scaffold_191_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(44889..45374)
DNA (486bp) protein (162aa)
Regulatory protein MarR Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3A9_TERSS
regulatory protein MarR
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying items 1-30 of 61 in total

View Taxonomy