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PLM4_65_b1_redo_sep16_scaffold_484

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_484_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..2034)
DNA (2034bp) protein (678aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTI4_SOLCM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_484_2
unknown

Not on your lists

comp(2141..2785)
DNA (645bp) protein (215aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_484_3
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(2826..5186)
DNA (2361bp) protein (787aa)
Uncharacterized protein {ECO:0000313|EMBL:KER10399.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein bin=BACIGN_2 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
TonB-dependent receptor
PLM4_65_b1_redo_sep16_scaffold_484_4
unknown

Not on your lists

comp(5343..5702)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_484_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5735..6658)
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TZQ5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP62239.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Pyridoxal-5'-phosphate-dependent protein beta subunit
PLM4_65_b1_redo_sep16_scaffold_484_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6723..7469)
DNA (747bp) protein (249aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_484_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7570..8643
DNA (1074bp) protein (358aa)
Uncharacterized protein Tax=Galbibacter marinus RepID=K2Q4S5_9FLAO
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_484_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

8640..11744
DNA (3105bp) protein (1035aa)
Peptidase S9B dipeptidylpeptidase IV domain protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
surface antigen (D15)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_484_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11933..13486)
DNA (1554bp) protein (518aa)
Bacterial leucyl aminopeptidase Tax=Cesiribacter andamanensis AMV16 RepID=M7NIT4_9BACT
peptidase M28
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_484_10
unknown

Not on your lists

comp(13657..14196)
DNA (540bp) protein (180aa)
id=12557778 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM4_65_b1_redo_sep16_scaffold_484_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14358..15152)
DNA (795bp) protein (265aa)
hypothetical protein Tax=Hymenobacter norwichensis RepID=UPI0003B694D6
protein of unknown function DUF4098
Uncharacterized protein {ECO:0000313|EMBL:AHG87877.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_484_12
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15215..15766)
DNA (552bp) protein (184aa)
hypothetical protein Tax=Geitlerinema sp. PCC 7105 RepID=UPI0003478B67
Uncharacterized protein {ECO:0000313|EMBL:KIF40913.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_484_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

15941..16864
DNA (924bp) protein (308aa)
Proline dehydrogenase Tax=uncultured candidate division OP1 bacterium RepID=H5SV36_9BACT bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_484_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

17097..17531
DNA (435bp) protein (145aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glyoxalase-like domain protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_484_15
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17578..18288
DNA (711bp) protein (237aa)
Uncharacterized protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7A9_GEODF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM20197.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_b1_redo_sep16_scaffold_484_16
unknown

Not on your lists

18303..18602
DNA (300bp) protein (100aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_484_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

18758..18991
DNA (234bp) protein (78aa)
hypothetical protein Tax=Candidatus Microthrix parvicella RepID=UPI000376001D
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_484_18
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18988..19659)
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DBR2_BRAJP
hypothetical protein
Alpha/beta hydrolase {ECO:0000313|EMBL:KGT74302.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
PLM4_65_b1_redo_sep16_scaffold_484_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19656..22208)
DNA (2553bp) protein (851aa)
DNA ligase D Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V2_ANADF
DNA ligase D
DNA ligase D {ECO:0000313|EMBL:AHG93522.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_484_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22252..23121
DNA (870bp) protein (290aa)
Probable DNA repair protein Anae109_0938 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V1_ANADF
Ku family containing protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_484_21
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23130..23969
DNA (840bp) protein (280aa)
Tetratricopeptide TPR_2 repeat protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V0_ANADF
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABS25146.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_65_b1_redo_sep16_scaffold_484_22
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

24022..24792
DNA (771bp) protein (257aa)
Uncharacterized protein Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZCE0_TERRK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_484_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

24792..27074
DNA (2283bp) protein (761aa)
protein of unknown function DUF1355
hypothetical membrane protein bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_484_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

27071..28036
DNA (966bp) protein (322aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACB3_GEMAT
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_484_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

28033..30534
DNA (2502bp) protein (834aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACB4_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_484_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

30531..31328
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACB5_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_484_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

31333..32379
DNA (1047bp) protein (349aa)
hypothetical protein; K03924 MoxR-like ATPase [EC:3.6.3.-] bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_484_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

32376..33269
DNA (894bp) protein (298aa)
hypothetical protein bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein of unknown function DUF58
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_484_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

33270..35306
DNA (2037bp) protein (679aa)
hypothetical membrane protein bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
double-transmembrane region domain protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_484_30
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

35403..38669
DNA (3267bp) protein (1089aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACB9_GEMAT
hypothetical membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying items 1-30 of 33 in total

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