ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_8660

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_8660_1

Not on your lists

1..1863
DNA (1863bp) protein (621aa)
Penicillin amidase (Fragment) Tax=uncultured bacterium RepID=D6R1Q1_9BACT
Penicillin amidase {ECO:0000313|EMBL:ADG60270.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidase S45 penicillin amidase
PLM4_65_b1_redo_sep16_scaffold_8660_2
unknown

Not on your lists

1932..2237
DNA (306bp) protein (102aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8660_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2405..4339
DNA (1935bp) protein (645aa)
Multi-sensor hybrid histidine kinase bin=GWD2_Nitrospirae-related_57_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_8660_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4341..5291)
DNA (951bp) protein (317aa)
Proline iminopeptidase Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GKS2_METPE
proline-specific peptidase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_8660_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5468..5851)
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTW7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE09905.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_8660_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5904..7388
DNA (1485bp) protein (495aa)
MATE efflux family protein Tax=uncultured bacterium 66 RepID=E3T665_9BACT
MATE efflux family protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_8660_7
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7471..7839
DNA (369bp) protein (123aa)
Dehydrogenase Tax=Cupriavidus sp. HPC(L) RepID=V2IAV5_9BURK
Dehydrogenase {ECO:0000313|EMBL:ESJ12005.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_8660_8
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

7839..8255
DNA (417bp) protein (139aa)
hypothetical protein bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
PLM4_65_b1_redo_sep16_scaffold_8660_9
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(8367..8936)
DNA (570bp) protein (190aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI00036F5B4B
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
PLM4_65_b1_redo_sep16_scaffold_8660_10
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9075..9845)
DNA (771bp) protein (257aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHQ4_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS28250.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_65_b1_redo_sep16_scaffold_8660_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9917..10330)
DNA (414bp) protein (138aa)
MarR family transcriptional regulator Tax=Hyphomicrobium zavarzinii RepID=UPI000362F5E9
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADJ23487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
PLM4_65_b1_redo_sep16_scaffold_8660_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10417..10746
DNA (330bp) protein (110aa)
transcriptional regulator Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B43DE2
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:AHG88212.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_8660_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10840..11964
DNA (1125bp) protein (375aa)
membrane protein Tax=Verrucomicrobium spinosum RepID=UPI0001744E20
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG88213.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_8660_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11961..15047
DNA (3087bp) protein (1029aa)
Putative RND efflux system, multidrug resistance protein Tax=Candidatus Nitrospira defluvii RepID=D8PIU1_9BACT
Acriflavin resistance protein {ECO:0000313|EMBL:AHG88214.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
acriflavin resistance protein
PLM4_65_b1_redo_sep16_scaffold_8660_15

Not on your lists

15044..15538
DNA (495bp) protein (165aa)
RND efflux system, outer membrane lipoprotein, NodT family Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VP13_CAUST
Uncharacterized protein {ECO:0000313|EMBL:AHN97966.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
NodT family RND efflux system outer membrane lipoprotein
Displaying 15 items

View Taxonomy