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PLM4_65_b1_redo_sep16_scaffold_1039

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1039_1
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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2..1162
DNA (1161bp) protein (387aa)
glutamate dehydrogenase
Glutamate dehydrogenase bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
PLM4_65_b1_redo_sep16_scaffold_1039_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1333..2886
DNA (1554bp) protein (518aa)
Response regulator bin=GWA2_Ignavibacteria_55_11 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
response regulator receiver protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1039_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2886..6053
DNA (3168bp) protein (1056aa)
Phosphoenolpyruvate synthase bin=GWA2_Ignavibacteria_55_11 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
phosphoenolpyruvate synthase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1039_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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6050..6922
DNA (873bp) protein (291aa)
calcineurin-like phosphoesterase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
calcineurin-like phosphoesterase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1039_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6980..9091
DNA (2112bp) protein (704aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS domain S-box
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_1039_6
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

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comp(9079..10515)
DNA (1437bp) protein (479aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, type I Tax=Planctomyces maris DSM 8797 RepID=A6CAR3_9PLAN
Tax=RBG_13_Planctomycetes_44_8b_curated
PLM4_65_b1_redo_sep16_scaffold_1039_7
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(10535..11104)
DNA (570bp) protein (190aa)
Elongation factor P Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=EFP_GEMAT
efp; elongation factor P
Elongation factor P {ECO:0000255|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000255|HAMAP-Rule:MF_00141};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_1039_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(11266..11997)
DNA (732bp) protein (244aa)
dihydroorotate dehydrogenase Tax=Thermus oshimai RepID=UPI00036C33B9
zinc/iron permease
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1039_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(11994..12725)
DNA (732bp) protein (244aa)
Putative uncharacterized protein Tax=Thermus sp. CCB_US3_UF1 RepID=G8N8Q6_9DEIN
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1039_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12733..14283)
DNA (1551bp) protein (517aa)
hypothetical protein Tax=Balneola vulgaris RepID=UPI00036AB56E
peptidase M20
Peptidase M20 {ECO:0000313|EMBL:AHG89293.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1039_11
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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14440..14961
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTJ9_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY13894.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_1039_12
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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15050..16072
DNA (1023bp) protein (341aa)
Fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase bin=GWB2_Deltaproteobacteria_65_81 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_65_b1_redo_sep16_scaffold_1039_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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16142..17713
DNA (1572bp) protein (524aa)
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AD13_GEMAT
protein kinase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1039_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17691..18299)
DNA (609bp) protein (203aa)
nicotinamidase (EC:3.5.1.19); K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nicotinamidase (EC:3.5.1.19)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_1039_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(18296..19174)
DNA (879bp) protein (293aa)
Aldo/keto reductase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LXR2_HALO1
aldo/keto reductase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_1039_16
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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19234..20412
DNA (1179bp) protein (393aa)
alias=gwe2_scaffold_136_199 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_65_b1_redo_sep16_scaffold_1039_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(20507..23764)
DNA (3258bp) protein (1086aa)
Periplasmic protease Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0APA8_IGNAJ
peptidase S41
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1039_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(23850..25067)
DNA (1218bp) protein (406aa)
DNA polymerase IV Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Y5_GEMAT
DNA polymerase IV
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_1039_19
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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25231..28308
DNA (3078bp) protein (1026aa)
Cation/multidrug efflux pump bin=GWF2_Ignavibacteria_35_20 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
multidrug transporter AcrB
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_65_b1_redo_sep16_scaffold_1039_20
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28305..29579
DNA (1275bp) protein (425aa)
Putative outer membrane macrolide efflux protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CKE9_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:KFE71914.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
putative outer membrane macrolide efflux protein
PLM4_65_b1_redo_sep16_scaffold_1039_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

29596..30627
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036AE21B
hemolysin D
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_1039_22
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

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30657..32162
DNA (1506bp) protein (502aa)
cytochrome c family protein bin=bin1_lowGC species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c family protein
Tax=RBG_13_Actinobacteria_63_9_curated
PLM4_65_b1_redo_sep16_scaffold_1039_23
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32330..32698
DNA (369bp) protein (123aa)
Uncharacterized protein bin=GWE2_Bacteroidetes_32_14 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=CG_Syntroph_02
PLM4_65_b1_redo_sep16_scaffold_1039_24
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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32884..33507
DNA (624bp) protein (208aa)
RNA polymerase subunit sigma-24 Tax=Fodinicurvata sediminis RepID=UPI0003B60941
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Gamma2_65_34_curated
PLM4_65_b1_redo_sep16_scaffold_1039_25
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33504..33782
DNA (279bp) protein (93aa)
Putative transmembrane anti-sigma factor Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DG69_9GAMM
anti-sigma factor
Tax=RBG_16_Gamma2_65_34_curated
PLM4_65_b1_redo_sep16_scaffold_1039_26
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

33793..34575
DNA (783bp) protein (261aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI000310E7A5
type 11 methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_b1_redo_sep16_scaffold_1039_27
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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34606..35085
DNA (480bp) protein (160aa)
Globin Tax=Geobacter sp. (strain M18) RepID=E8WJ72_GEOS8
globin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_1039_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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35094..35606
DNA (513bp) protein (171aa)
DinB family protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
DinB family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1039_29
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(36366..36893)
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7Y8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38348.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_1039_30
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(37072..39474)
DNA (2403bp) protein (801aa)
Uncharacterized protein Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C3L2_9BACT
outer membrane receptor for Fe3+-dicitrate
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Displaying 30 items

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