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PLM4_65_b1_redo_sep16_scaffold_1452

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1452_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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190..2097
DNA (1908bp) protein (636aa)
2-oxoglutarate ferredoxin oxidoreductase alpha subunit bin=GWC2_Methylomirabilis_70_16 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
2-oxoacid:acceptor oxidoreductase, alpha subunit
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_1452_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2094..3056
DNA (963bp) protein (321aa)
2-oxoglutarate oxidoreductase, beta subunit bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate TPP-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_1452_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3046..4041
DNA (996bp) protein (332aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_1452_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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4043..4903
DNA (861bp) protein (287aa)
Electron transport complex, RnfABCDGE type, B subunit subfamily bin=GWC2_Methylomirabilis_70_16 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fe-S cluster domain protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_1452_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4900..9933
DNA (5034bp) protein (1678aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein bin=GWA2_Methylomirabilis_73_35 species=Ectothiorhodospira sp. PHS-1 genus=Ectothiorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1452_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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9903..11255
DNA (1353bp) protein (451aa)
Electron transport complex protein RnfC bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Electron transport complex protein rnfC
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_b1_redo_sep16_scaffold_1452_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11321..12256
DNA (936bp) protein (312aa)
electron transport complex, RnfABCDGE type, D subunit
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Electron transport complex, NQR2 and RnfD bin=GWA2_Methylomirabilis_73_35 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PLM4_65_b1_redo_sep16_scaffold_1452_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12253..12930
DNA (678bp) protein (226aa)
Electron transport complex protein RnfG bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FMN-binding domain protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_1452_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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12927..13589
DNA (663bp) protein (221aa)
Electron transport complex protein RnfE1 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RnfA-Nqr electron transport subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_b1_redo_sep16_scaffold_1452_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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13589..14167
DNA (579bp) protein (193aa)
Electron transport complex protein RnfA1 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RnfABCDGE type electron transport complex subunit A
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_1452_11
unknown

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14164..14340
DNA (177bp) protein (59aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1452_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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14327..15316
DNA (990bp) protein (330aa)
Putative THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE TRANSMEMBRANE (Modular protein) bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ApbE family lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_b1_redo_sep16_scaffold_1452_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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15436..17952
DNA (2517bp) protein (839aa)
peptidase Tax=Nevskia ramosa RepID=UPI0003B72EE3
peptidase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1452_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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17981..18688
DNA (708bp) protein (236aa)
short-chain dehydrogenase/reductase SDR bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
short-chain dehydrogenase/reductase SDR
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_1452_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(18818..19381)
DNA (564bp) protein (188aa)
Peptide deformylase bin=GWC2_Ignavibacteria_56_12 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
formylmethionine deformylase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1452_16
RLO_RIF05_58_11, RIF5, Bacteria

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19408..20013
DNA (606bp) protein (202aa)
4-diphosphocytidyl-2C-methyl-D-erythritolsynthas E bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MobA-like protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_65_b1_redo_sep16_scaffold_1452_17
unknown

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20066..20542
DNA (477bp) protein (159aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1452_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(20560..21903)
DNA (1344bp) protein (448aa)
Phosphomethylpyrimidine synthase Tax=Sorangium cellulosum (strain So ce56) RepID=A9EXI3_SORC5
thiC; thiamin biosynthesis protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_1452_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(22098..24596)
DNA (2499bp) protein (833aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1452_20
Petromyzon marinus, Petromyzon, Petromyzontiformes, Chordata, Metazoa

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comp(24779..26047)
DNA (1269bp) protein (423aa)
Uncharacterized protein (Fragment) Tax=Petromyzon marinus RepID=S4RII4_PETMA
Uncharacterized protein {ECO:0000313|Ensembl:ENSPMAP00000005016}; Flags: Fragment;; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon.;" source="Petromyzon marinus (Sea lamprey).;"
hypothetical protein
Displaying 20 items

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