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PLM4_65_b1_redo_sep16_scaffold_2146

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2146_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..350
DNA (348bp) protein (116aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003791ECC
putative cytochrome c
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_2146_2
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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367..1137
DNA (771bp) protein (257aa)
hypothetical protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5F0A6
hypothetical protein
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM4_65_b1_redo_sep16_scaffold_2146_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

1147..1818
DNA (672bp) protein (224aa)
cytochrome c oxidase, subunit II bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cytochrome c oxidase subunit II
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2146_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1815..3545
DNA (1731bp) protein (577aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
cytochrome c oxidase subunit I (EC:1.9.3.1)
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_2146_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

3542..4135
DNA (594bp) protein (198aa)
Cytochrome c oxidase subunit III bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cytochrome C oxidase subunit III
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2146_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

4143..4421
DNA (279bp) protein (93aa)
Caa(3)-type oxidase, subunit IV bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C oxidase subunit IV
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2146_7
unknown

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4418..4690
DNA (273bp) protein (91aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2146_8
unknown

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4687..4878
DNA (192bp) protein (64aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2146_9
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

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5070..5780
DNA (711bp) protein (237aa)
Tax=GWC1_Treponema_61_84_curated
PLM4_65_b1_redo_sep16_scaffold_2146_10
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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5870..6328
DNA (459bp) protein (153aa)
Tax=RBG_16_Chloroflexi_63_12_curated
PLM4_65_b1_redo_sep16_scaffold_2146_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6366..7931)
DNA (1566bp) protein (522aa)
Putative S1 family peptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB13_GEMAT
PDZ/DHR/GLGF domain protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_2146_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(8082..10013)
DNA (1932bp) protein (644aa)
Chaperone protein DnaK Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB12_GEMAT
Chaperone protein dnaK
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_2146_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10219..10968
DNA (750bp) protein (250aa)
rhomboid family protein bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rhomboid family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_b1_redo_sep16_scaffold_2146_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(10988..11677)
DNA (690bp) protein (230aa)
Phosphate-specific transport system accessory protein PhoU Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB06_GEMAT
phoU; phosphate transport system regulatory protein PhoU
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2146_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(11674..12429)
DNA (756bp) protein (252aa)
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] bin=CNBR_ACIDO species=Desulfovibrio oxyclinae genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphate ABC transporter ATPase (EC:3.6.3.27)
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_2146_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12426..13193)
DNA (768bp) protein (256aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Phosphate ABC transporter ATP-binding protein, PhoT family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4M1_GEOUR
phosphate ABC transporter ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_2146_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(13186..14031)
DNA (846bp) protein (282aa)
Phosphate ABC transporter, permease protein PstA Tax=Melioribacter roseus (strain P3M) RepID=I7A3S9_MELRP
phosphate ABC transporter, permease protein PstA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2146_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14028..14993)
DNA (966bp) protein (322aa)
Phosphate ABC transporter membrane protein 1, PhoT family bin=GWA1_Deltaproteobacteria_52_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
phosphate ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_2146_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15014..16072)
DNA (1059bp) protein (353aa)
Phosphate-binding protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PRA3_9FIRM
phosphate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2146_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16214..16792)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB00_GEMAT
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_2146_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16882..18552)
DNA (1671bp) protein (557aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ9_GEMAT
Fibronectin type III domain protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_2146_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18647..21409)
DNA (2763bp) protein (921aa)
TonB-dependent outer membrane transport protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ8_GEMAT
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHG89427.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_2146_23
CG_Arma_01, Armatimonadetes, Bacteria

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comp(21614..21823)
DNA (210bp) protein (70aa)
Redox-active disulfide protein 2 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
redox-active disulfide protein 2
Tax=CG_Arma_01
PLM4_65_b1_redo_sep16_scaffold_2146_24
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21853..23163)
DNA (1311bp) protein (437aa)
Membrane protein, putative Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A847_PELCD
membrane protein
Membrane protein, putative {ECO:0000313|EMBL:ABA87445.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
PLM4_65_b1_redo_sep16_scaffold_2146_25
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23188..23508)
DNA (321bp) protein (107aa)
ArsR family transcriptional regulator Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B764A5
regulatory protein ArsR
Tax=CG_Delta_03
PLM4_65_b1_redo_sep16_scaffold_2146_26
GWE2_OD1_46_68, Uhrbacteria, Parcubacteria, Bacteria

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comp(23586..23732)
DNA (147bp) protein (49aa)
Putative uncharacterized protein bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKU40307.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWE2_46_68.;"
Phosphoesterase PA-phosphatase related protein
Displaying 26 items

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