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PLM4_65_b1_redo_sep16_scaffold_2186

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2186_1
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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1..321
DNA (321bp) protein (107aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI00036AD46E
ATP-dependent DNA helicase RecQ
Tax=RBG_16_Actinobacteria_68_21_curated
PLM4_65_b1_redo_sep16_scaffold_2186_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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424..666
DNA (243bp) protein (81aa)
Ribbon-helix-helix protein, copG family bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CopG family transcriptional regulator
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_2186_3
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

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732..989
DNA (258bp) protein (86aa)
PemK-like protein; K07171 mRNA interferase [EC:3.1.-.-] bin=bin9_gal15 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
PemK family protein
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_65_b1_redo_sep16_scaffold_2186_4

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1167..1541
DNA (375bp) protein (125aa)
BlaI family transcriptional regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9G6_GEMAT
Marine sediment metagenome DNA, contig: S01H1_S04445 {ECO:0000313|EMBL:GAF88448.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Penicillinase repressor
PLM4_65_b1_redo_sep16_scaffold_2186_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1538..2773
DNA (1236bp) protein (412aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A739_GEMAT
peptidase M56 BlaR1
Peptidase M56 BlaR1 {ECO:0000313|EMBL:AHG92032.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_2186_6
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(2862..5486)
DNA (2625bp) protein (875aa)
Efflux ABC transporter, permease protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F743_ACIC5
efflux ABC transporter permease
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ACO33001.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM4_65_b1_redo_sep16_scaffold_2186_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(5489..5899)
DNA (411bp) protein (137aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367E3A6
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ACO34172.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
PLM4_65_b1_redo_sep16_scaffold_2186_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(6062..7444)
DNA (1383bp) protein (461aa)
hypothetical protein Tax=Eudoraea adriatica RepID=UPI0003677A45
beta-lactamase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2186_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7654..8211
DNA (558bp) protein (186aa)
protein of unknown function DUF820
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2186_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(8308..8475)
DNA (168bp) protein (56aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2186_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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8476..8685
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_2186_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8685..9101
DNA (417bp) protein (139aa)
Probable ribonuclease VapC bin=GWC2_Geobacteraceae_55_20 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PilT domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_b1_redo_sep16_scaffold_2186_13
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9867..10733)
DNA (867bp) protein (289aa)
hemagglutinin Tax=Xanthomonas sp. SHU199 RepID=UPI000365C846
cellobiohydrolase A (1,4-beta-cellobiosidase A)
Tax=BJP_08E140C01_Burkholderiales_65_30
PLM4_65_b1_redo_sep16_scaffold_2186_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11144..13318
DNA (2175bp) protein (725aa)
Peptidase S46 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKJ6_RHOMR
peptidase S46
Peptidase S46 {ECO:0000313|EMBL:AEN73550.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_2186_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(13324..14478)
DNA (1155bp) protein (385aa)
peptidase M24 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B6F349
peptidase M24
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2186_16
unknown

Not on your lists

comp(14718..14966)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2186_17
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

15242..16390
DNA (1149bp) protein (383aa)
Efflux transporter, RND family, MFP subunit bin=GWC2_Nitrospirae_57_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RND family efflux transporter MFP subunit
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_b1_redo_sep16_scaffold_2186_18
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16387..19509
DNA (3123bp) protein (1041aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
acriflavin resistance protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_65_b1_redo_sep16_scaffold_2186_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

19659..21464
DNA (1806bp) protein (602aa)
penicillin-binding protein 1B (EC:2.4.1.129)
penicillin-binding protein 1B Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000360A3F6
Tax=RBG_16_Gemmatimonadetes_66_8_curated
Displaying 19 items

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