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PLM4_32_b1_sep16_scaffold_1019

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1019_1
unknown

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comp(2..139)
DNA (138bp) protein (46aa)
peptidase S41; K08676 tricorn protease [EC:3.4.21.-] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
PLM4_32_b1_sep16_scaffold_1019_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(313..1818)
DNA (1506bp) protein (502aa)
Beta-lactamase family protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A991_GEMAT
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AHG93627.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1815..3692)
DNA (1878bp) protein (626aa)
Putative hydrolase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A993_GEMAT
hydrolase CocE/NonD family protein
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:AHG93622.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3700..4518)
DNA (819bp) protein (273aa)
GntR family transcriptional regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A992_GEMAT
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:BAH39069.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_32_b1_sep16_scaffold_1019_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4670..7681
DNA (3012bp) protein (1004aa)
Putative outer membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA6_GEMAT
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG93618.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
TonB-dependent outer membrane protein, SusC/RagA
PLM4_32_b1_sep16_scaffold_1019_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7717..9039
DNA (1323bp) protein (441aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABA5_GEMAT
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG93619.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9145..9846
DNA (702bp) protein (234aa)
Metalloendopeptidase-like membrane protein Tax=Polaromonas sp. CF318 RepID=J2L0U7_9BURK
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EJL78898.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
peptidase M23B
PLM4_32_b1_sep16_scaffold_1019_8
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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9891..11108
DNA (1218bp) protein (406aa)
FAD dependent oxidoreductase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C690_SPHTD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACZ37628.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM4_32_b1_sep16_scaffold_1019_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11189..12118
DNA (930bp) protein (310aa)
D-aminoacylase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A989_GEMAT
D-aminoacylase domain protein
D-aminoacylase domain protein {ECO:0000313|EMBL:AHG93631.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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12448..12912
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=uncultured SUP05 cluster bacterium RepID=D0U4C6_9GAMM
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_32_b1_sep16_scaffold_1019_11
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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comp(12943..13374)
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PIF0_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM4_32_b1_sep16_scaffold_1019_12
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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13586..14821
DNA (1236bp) protein (412aa)
Putative uncharacterized protein bin=GWC2_Deltaproteobacteria_55_46 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
Tax=CG_Hydro_01
PLM4_32_b1_sep16_scaffold_1019_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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14961..16175
DNA (1215bp) protein (405aa)
Putative 2-nitropropane dioxygenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML20_9BACT
2-nitropropane dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_32_b1_sep16_scaffold_1019_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16255..16917)
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1B2B0_9ZZZZ
putative uncharacterized protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_32_b1_sep16_scaffold_1019_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17159..18619)
DNA (1461bp) protein (487aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Adenosylhomocysteinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEG7_GEMAT
Adenosylhomocysteinase
PLM4_32_b1_sep16_scaffold_1019_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18616..19602)
DNA (987bp) protein (329aa)
Methyltransferase type 11
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_32_b1_sep16_scaffold_1019_17
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19797..20357
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZL8_CAUCN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK24429.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
PLM4_32_b1_sep16_scaffold_1019_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20649..22193)
DNA (1545bp) protein (515aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAH37899.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAH37899.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6N9_GEMAT
PLM4_32_b1_sep16_scaffold_1019_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22300..23133
DNA (834bp) protein (278aa)
hypothetical protein Tax=Hymenobacter norwichensis RepID=UPI0003B694D6
protein of unknown function DUF4098
Uncharacterized protein {ECO:0000313|EMBL:AHG87877.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(23387..24430)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D8E69
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1019_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24427..25065)
DNA (639bp) protein (213aa)
Putative integral membrane protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q2W7_9FIRM
putative integral membrane protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1019_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25058..25339)
DNA (282bp) protein (94aa)
Putative transcriptional regulator Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6P2V7_9FIRM
transcriptional regulator, ArsR family
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1019_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25438..27207
DNA (1770bp) protein (590aa)
UPI0003CF8476 related cluster Tax=unknown RepID=UPI0003CF8476
PQQ-dependent dehydrogenase, methanol/ethanol family
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:AHG91607.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

27405..27641
DNA (237bp) protein (79aa)
hypothetical protein Tax=Rhizobium loti RepID=UPI00035E6308
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AHG91609.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1019_25
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(27643..28152)
DNA (510bp) protein (170aa)
transmembrane_regions bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_32_b1_sep16_scaffold_1019_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(28149..29093)
DNA (945bp) protein (315aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4Y7Y1_SORCE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_32_b1_sep16_scaffold_1019_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(29157..30086)
DNA (930bp) protein (310aa)
Putative ABC transporter ATP-binding protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9G391_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1019_28
unknown

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comp(30129..30446)
DNA (318bp) protein (106aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1019_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(30443..31030)
DNA (588bp) protein (196aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002D6F02B
transcriptional regulator PadR family protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
Displaying 29 items

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