ggKbase home page

PLM4_32_b1_sep16_scaffold_1598

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1598_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..185)
DNA (183bp) protein (61aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A878_GEMAT
protein of unknown function UPF0001
Uncharacterized protein {ECO:0000313|EMBL:AHG90584.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1598_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(260..2713)
DNA (2454bp) protein (818aa)
Putative uncharacterized protein Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B6C0_PELLD
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_1598_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2710..3879)
DNA (1170bp) protein (390aa)
Dihydropteroate synthase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCU3_ANADF
dihydropteroate synthase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1598_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3876..5618)
DNA (1743bp) protein (581aa)
ATP-dependent zinc metalloprotease FtsH Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A875_GEMAT
peptidase M41 FtsH domain protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1598_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(5871..6425)
DNA (555bp) protein (185aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:BAH38434.1}; EC=2.4.2.8 {ECO:0000313|EMBL:BAH38434.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Hypoxanthine phosphoribosyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A874_GEMAT
PLM4_32_b1_sep16_scaffold_1598_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6409..7734)
DNA (1326bp) protein (442aa)
tRNA(Ile)-lysidine synthase
tRNA(Ile)-lysidine synthase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1598_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7731..8597)
DNA (867bp) protein (289aa)
Cation diffusion facilitator family transporter Tax=Singulisphaera acidiphila RepID=L0DS85_SINAD
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AGA31261.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_32_b1_sep16_scaffold_1598_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8605..10929)
DNA (2325bp) protein (775aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDP0_RHOM4
peptidase S9B dipeptidylpeptidase IV domain protein
Peptidase S9B dipeptidylpeptidase IV domain protein {ECO:0000313|EMBL:AHG89559.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1598_9
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10940..11683)
DNA (744bp) protein (248aa)
Aspartate racemase Tax=Clostridium pasteurianum BC1 RepID=R4KCP7_CLOPA
aspartate racemase
Aspartate racemase {ECO:0000313|EMBL:AGK97390.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
PLM4_32_b1_sep16_scaffold_1598_10
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11680..12315)
DNA (636bp) protein (212aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxal 5'-phosphate synthase {ECO:0000256|SAAS:SAAS00025317}; EC=1.4.3.5 {ECO:0000256|SAAS:SAAS00025317};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Pyridoxamine 5'-phosphate oxidase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NI68_ROSCS
PLM4_32_b1_sep16_scaffold_1598_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12312..12674)
DNA (363bp) protein (121aa)
GCN5-related N-acetyltransferase Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SBK8_ACTS5
Acetyltransferase {ECO:0000313|EMBL:ETW92987.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
cysE; N-acetyltransferase GCN5
PLM4_32_b1_sep16_scaffold_1598_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12771..14102)
DNA (1332bp) protein (444aa)
Fumarylacetoacetate hydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ42_KORVE
fumarylacetoacetase
Fumarylacetoacetase {ECO:0000313|EMBL:AHG89866.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1598_13
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(14087..14368)
DNA (282bp) protein (94aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK78_CHLTF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEP13565.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_32_b1_sep16_scaffold_1598_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14368..14856)
DNA (489bp) protein (163aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ43_KORVE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_b1_sep16_scaffold_1598_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14853..16004)
DNA (1152bp) protein (384aa)
Sarcosine oxidase Tax=Chloroflexus RepID=A9WBA1_CHLAA bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
FAD dependent oxidoreductase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1598_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16088..16942
DNA (855bp) protein (285aa)
Beta-lactamase domain protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIQ1_RHOM4
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACY48359.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_32_b1_sep16_scaffold_1598_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16946..17740)
DNA (795bp) protein (265aa)
Putative histidinol-phosphate phosphatase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4L6_GEMAT
histidinol-phosphate phosphatase
Histidinol-phosphate phosphatase {ECO:0000313|EMBL:AHG88804.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1598_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17763..18458)
DNA (696bp) protein (232aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJG8_RHOM4
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_1598_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18460..19956)
DNA (1497bp) protein (499aa)
Putative oxidoreductase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4L3_GEMAT
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAH37173.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_32_b1_sep16_scaffold_1598_20
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20025..20396)
DNA (372bp) protein (124aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002F4A75B
Signal transduction histidine kinase {ECO:0000313|EMBL:CDS55324.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
multi-sensor hybrid histidine kinase
PLM4_32_b1_sep16_scaffold_1598_21
unknown

Not on your lists

20578..21429
DNA (852bp) protein (284aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1598_22
unknown

Not on your lists

comp(21605..21823)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1598_23
unknown

Not on your lists

comp(21823..22164)
DNA (342bp) protein (114aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1598_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(22403..23197)
DNA (795bp) protein (265aa)
Gll2427 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NHV8_GLOVI
permease
Permease {ECO:0000313|EMBL:AHG88486.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 24 items

View Taxonomy