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PLM4_32_b1_sep16_scaffold_811

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_811_1
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..1296)
DNA (1296bp) protein (432aa)
MATE efflux family protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UN55_MYXSD
Multidrug transporter MatE {ECO:0000313|EMBL:KFA94227.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
MATE efflux family protein
PLM4_32_b1_sep16_scaffold_811_2
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(2413..3138)
DNA (726bp) protein (242aa)
short-chain alcohol dehydrogenase Tax=Schlesneria paludicola RepID=UPI00029A9FF3
short-chain alcohol dehydrogenase
Dehydrogenase with different specificities, short-chain alcohol dehydrogenases like protein {ECO:0000313|EMBL:AEP13362.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_32_b1_sep16_scaffold_811_3
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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3176..4105
DNA (930bp) protein (310aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
Pantothenate kinase Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CY99_TRURR
pantothenate kinase
PLM4_32_b1_sep16_scaffold_811_4
unknown

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4255..4671
DNA (417bp) protein (139aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_811_5
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4660..4824)
DNA (165bp) protein (55aa)
Putative aminopeptidase Tax=Caulobacter sp. AP07 RepID=J3A229_9CAUL
Peptidase M20 {ECO:0000313|EMBL:KIA91518.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
peptidase M28
PLM4_32_b1_sep16_scaffold_811_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4863..5573)
DNA (711bp) protein (237aa)
Peptidase M28 Tax=Caulobacter sp. (strain K31) RepID=B0T609_CAUSK
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:ABZ72590.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
PLM4_32_b1_sep16_scaffold_811_7
unknown

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comp(5597..6127)
DNA (531bp) protein (177aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_811_8
unknown

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comp(6249..6554)
DNA (306bp) protein (102aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_811_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(6551..8614)
DNA (2064bp) protein (688aa)
peptidyl-prolyl cis-trans isomerase cyclophilin type
peptidyl-prolyl cis-trans isomerase bin=CNBR_ACIDO species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_32_b1_sep16_scaffold_811_10
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

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8745..9062
DNA (318bp) protein (106aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=GWF2_Nitrospirae_44_13_curated
PLM4_32_b1_sep16_scaffold_811_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(9119..10630)
DNA (1512bp) protein (504aa)
Hydrolase bin=GWA2_Methylomirabilis_73_35 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_811_12
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

10693..11139
DNA (447bp) protein (149aa)
hypothetical protein Tax=Sphingomonas echinoides RepID=UPI00026CC490
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM4_32_b1_sep16_scaffold_811_13
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11136..11720)
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T2W6_SYNGF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY57603.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
PLM4_32_b1_sep16_scaffold_811_14
uncultured Latescibacteria bacterium, Latescibacteria, Bacteria

Not on your lists

comp(11708..13768)
DNA (2061bp) protein (687aa)
Uncharacterized protein Tax=uncultured Latescibacteria bacterium RepID=Q2YZV3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAI78819.1}; species="Bacteria; Latescibacteria; environmental samples.;" source="uncultured Latescibacteria bacterium.;"
S9A family peptidase
PLM4_32_b1_sep16_scaffold_811_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(13765..14352)
DNA (588bp) protein (196aa)
Acetyltransferase, GNAT family Tax=marine gamma proteobacterium HTCC2148 RepID=B7RTE9_9GAMM
N-acetyltransferase GCN5
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_b1_sep16_scaffold_811_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14349..15524)
DNA (1176bp) protein (392aa)
aminotransferase (EC:2.6.1.-) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
aminotransferase class I and II
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_811_17
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15587..16315
DNA (729bp) protein (243aa)
Cyclase family protein Tax=Methylocystis sp. (strain SC2) RepID=J7Q7X9_METSZ
Cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:CCJ06487.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
PLM4_32_b1_sep16_scaffold_811_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16398..17042)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A856_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_811_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17087..19825)
DNA (2739bp) protein (913aa)
Gll1201 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
permease
Permease {ECO:0000313|EMBL:AHG88174.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_811_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19822..20061)
DNA (240bp) protein (80aa)
Transcriptional regulator, PadR family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ03_KORVE
transcriptional regulator, PadR-family
Transcriptional regulator, PadR-family {ECO:0000313|EMBL:AHG93733.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 20 items

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