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PLM0_60_b1_sep16_scaffold_1454

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_1454_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(2..178)
DNA (177bp) protein (59aa)
OmpA/MotB domain protein Tax=Rhodothermus marinus RepID=D0MG70_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
OmpA/MotB domain protein
OmpA/MotB domain protein {ECO:0000313|EMBL:AHG89864.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1454_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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309..1763
DNA (1455bp) protein (485aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE0_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM0_60_b1_sep16_scaffold_1454_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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1763..2563
DNA (801bp) protein (267aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE0_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM0_60_b1_sep16_scaffold_1454_4
uncultured Aminicenantes bacterium, Aminicenantes, Bacteria

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2750..3967
DNA (1218bp) protein (406aa)
rhlE; ATP-dependent RNA helicase RhlE (EC:3.6.1.-)
Uncharacterized protein Tax=uncultured Aminicenantes bacterium RepID=Q2YZZ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAI78566.1}; species="Bacteria; Aminicenantes; environmental samples.;" source="uncultured Aminicenantes bacterium.;"
PLM0_60_b1_sep16_scaffold_1454_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3987..4991)
DNA (1005bp) protein (335aa)
Aldo/keto reductase Tax=Pedosphaera parvula Ellin514 RepID=B9XJZ4_9BACT
Aldo/keto reductase {ECO:0000313|EMBL:EEF59817.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aldo/keto reductase family oxidoreductase
PLM0_60_b1_sep16_scaffold_1454_6
unknown

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5097..5486
DNA (390bp) protein (130aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_1454_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5571..6641
DNA (1071bp) protein (357aa)
Putative NADPH-dependent FMN reductase Tax=Variovorax paradoxus B4 RepID=T1X2M3_VARPD
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AHG92526.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1454_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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6697..7446
DNA (750bp) protein (250aa)
hypothetical protein Tax=Leucobacter salsicius RepID=UPI00034B2626
ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AHG92367.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1454_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7443..9032
DNA (1590bp) protein (530aa)
Glycine betaine/L-proline ABC transporter permease and substrate-binding protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U2B6_MYXSD bin=16ft_combo_ws3_JS1 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC-type glycine betaine transport, periplasmic subunit
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:AHG92368.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1454_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(9029..9910)
DNA (882bp) protein (294aa)
Uncharacterized protein Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HJZ4_CYAP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89403.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_1454_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9973..11118
DNA (1146bp) protein (382aa)
alias=16ft_combo_ws3_scaffold_11554_18 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM0_60_b1_sep16_scaffold_1454_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(11122..12072)
DNA (951bp) protein (317aa)
Amino acid permease Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B4_GEMAT
amino acid permease
Amino acid permease {ECO:0000313|EMBL:BAH38474.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_1454_13
GWA2_WOR_2_45_18_curated, WOR-2, Bacteria

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comp(12051..12653)
DNA (603bp) protein (201aa)
Amino acid permease-associated region bin=GWC2_OP3-like_45_7 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
amino acid permease
Tax=GWA2_WOR_2_45_18_curated
PLM0_60_b1_sep16_scaffold_1454_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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12776..13516
DNA (741bp) protein (247aa)
GntR family transcriptional regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A992_GEMAT
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_1454_15
unknown

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comp(13601..13816)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_1454_16
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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14052..14528
DNA (477bp) protein (159aa)
Putative Oxidoreductase, NmrA-like bin=GWF2_Lentisphaerae_57_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
putative oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Displaying 16 items

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