ggKbase home page

PLM0_60_b1_sep16_scaffold_516

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_516_1
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..1971)
DNA (1971bp) protein (657aa)
TonB-dependent outer membrane transport protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Z2_GEMAT
TonB-dependent outer membrane transport protein
TonB-dependent outer membrane transport protein {ECO:0000313|EMBL:BAH39590.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_516_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2052..4865)
DNA (2814bp) protein (938aa)
sensor histidine kinase/response regulator hybrid protein (EC:2.7.13.3)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI00036429AA
Tax=RBG_16_Deltaproteobacteria_64_85_curated
PLM0_60_b1_sep16_scaffold_516_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4966..5970)
DNA (1005bp) protein (335aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Signal transduction histidine kinase Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHT4_METFS
ATP-binding region ATPase domain protein
PLM0_60_b1_sep16_scaffold_516_trna_1
unknown

Not on your lists

6131..6203
DNA (73bp)
transferRNA Lys
PLM0_60_b1_sep16_scaffold_516_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6366..6848
DNA (483bp) protein (161aa)
Putative uncharacterized protein Tax=Thiocapsa marina 5811 RepID=F9UHD3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90865.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_516_5
BJP_IG2102_ACD39_51_10, ACD39, Bacteria

Not on your lists

6856..7311
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P4S3_AROAE
hypothetical protein
Tax=BJP_IG2102_ACD39_51_10
PLM0_60_b1_sep16_scaffold_516_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7346..8173
DNA (828bp) protein (276aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7TZA1_DESML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90863.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_516_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8185..10893
DNA (2709bp) protein (903aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P4S6_AROAE
isocitrate dehydrogenase, NADP-dependent
PLM0_60_b1_sep16_scaffold_516_8
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10955..14059
DNA (3105bp) protein (1035aa)
Putative outer membrane protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08TB0_STIAD
TonB-dependent receptor
Putative outer membrane protein {ECO:0000313|EMBL:EAU63723.1}; TonB-dependent receptor {ECO:0000313|EMBL:ADO75923.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM0_60_b1_sep16_scaffold_516_9
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14061..15470
DNA (1410bp) protein (470aa)
Uncharacterized protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2RSZ1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK86136.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
PLM0_60_b1_sep16_scaffold_516_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15500..16039
DNA (540bp) protein (180aa)
MarR family transcriptional regulator Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UG53_MYXSD
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:AHG87828.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_516_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16031..17299)
DNA (1269bp) protein (423aa)
Cyclic diguanylate phosphodiesterase bin=GWC2_Deltaproteobacteria_42_51 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cyclic diguanylate phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_516_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17292..17882)
DNA (591bp) protein (197aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_516_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17915..19300)
DNA (1386bp) protein (462aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_516_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19501..20664
DNA (1164bp) protein (388aa)
Major facilitator superfamily protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ9_GEMAT
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG88025.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_516_15
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20688..21074
DNA (387bp) protein (129aa)
Large-conductance mechanosensitive channel Tax=Anaerococcus prevotii ACS-065-V-Col13 RepID=F0GVL5_9FIRM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus prevotii ACS-065-V-Col13.;"
large conductance mechanosensitive channel protein
PLM0_60_b1_sep16_scaffold_516_16
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21088..21300)
DNA (213bp) protein (71aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Deltaproteobacteria_66_88 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
histidine kinase
Tax=GWA2_Deltaproteobacteria_65_63_curated
Displaying 17 items

View Taxonomy