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PLM0_60_b1_sep16_scaffold_804

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_804_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(29..628)
DNA (600bp) protein (200aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Holliday junction ATP-dependent DNA helicase RuvA Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RUVA_GEMAT
Holliday junction ATP-dependent DNA helicase ruvA
PLM0_60_b1_sep16_scaffold_804_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(625..1134)
DNA (510bp) protein (170aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Crossover junction endodeoxyribonuclease RuvC Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A616_GEMAT
Crossover junction endodeoxyribonuclease ruvC
PLM0_60_b1_sep16_scaffold_804_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1148..1891)
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein GAU_0635 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=Y635_GEMAT
UPF0082 protein yeeN
Probable transcriptional regulatory protein J421_2581 {ECO:0000256|HAMAP-Rule:MF_00693}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_4
unknown

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comp(1894..2340)
DNA (447bp) protein (149aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_804_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2387..3967
DNA (1581bp) protein (527aa)
Putative response regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A620_GEMAT
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:AHG90119.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3968..5836
DNA (1869bp) protein (623aa)
Lipid A export ATP-binding/permease protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A621_GEMAT
ABC transporter transmembrane region
ABC transporter transmembrane region {ECO:0000313|EMBL:AHG90120.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5842..6996
DNA (1155bp) protein (385aa)
Glycosyl transferase group 1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XEV3_NAKMY
glycosyl transferase group 1
Glycosyl transferase group 1 {ECO:0000313|EMBL:AHG90121.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_8
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

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6993..7772
DNA (780bp) protein (260aa)
cell wall biosynthesis glycosyltransferase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
family 2 glycosyl transferase
Tax=RBG_13_Planctomycetes_63_9_curated
PLM0_60_b1_sep16_scaffold_804_9
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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7827..8750
DNA (924bp) protein (308aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003679BC2
spore maturation protein CgeB
Tax=RBG_16_Acidobacteria_64_8_curated
PLM0_60_b1_sep16_scaffold_804_10
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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8808..9947
DNA (1140bp) protein (380aa)
Glycosyl transferase group 1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S3E1_9CYAN
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:AFY65147.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
PLM0_60_b1_sep16_scaffold_804_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

9944..10927
DNA (984bp) protein (328aa)
Putative lipid A biosynthesis acyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9G0_GEMAT
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:AHG90123.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10940..11800
DNA (861bp) protein (287aa)
Putative peptide ABC transporter permease protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A623_GEMAT
ABC-type transporter, integral membrane subunit
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG90124.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11910..12722
DNA (813bp) protein (271aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB73_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG87966.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12750..13502
DNA (753bp) protein (251aa)
Small-conductance mechanosensitive ion channel-like protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4T5_RAMTT
small-conductance mechanosensitive ion channel
Small-conductance mechanosensitive ion channel-like protein {ECO:0000313|EMBL:AEG92591.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
PLM0_60_b1_sep16_scaffold_804_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13602..13874)
DNA (273bp) protein (91aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI000344C69B
Protein of unknown function DUF3303
Uncharacterized protein {ECO:0000313|EMBL:AHG88088.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_804_16
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(13874..14251)
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V5C5_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV84884.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
Displaying 16 items

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