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PLM0_60_b1_sep16_scaffold_882

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_882_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3..752
DNA (750bp) protein (250aa)
UPF0182 protein DAMO_1249 bin=GWC2_CP_Nitrospirae-rel_42_7 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM0_60_b1_sep16_scaffold_882_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(788..1564)
DNA (777bp) protein (259aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C0DEF
LytR/AlgR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM0_60_b1_sep16_scaffold_882_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(1561..2892)
DNA (1332bp) protein (444aa)
Sensor protein lytS Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U5H7_MYXSD
Sensor protein lytS
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM0_60_b1_sep16_scaffold_882_4
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3141..3800)
DNA (660bp) protein (220aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
n-(5'-phosphoribosyl)anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FXI1_STIAD
PLM0_60_b1_sep16_scaffold_882_5
unknown

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3918..4034
DNA (117bp) protein (39aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_882_6
unknown

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4154..4393
DNA (240bp) protein (80aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_882_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4552..4812
DNA (261bp) protein (87aa)
Transglycosylase-associated family protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FZR8_STIAD
Transglycosylase-associated protein
Transglycosylase-associated protein {ECO:0000313|EMBL:AHG91953.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_882_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

4910..5263
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZC1_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB51886.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM0_60_b1_sep16_scaffold_882_9
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5326..6252
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5G9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37479.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_882_10
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

6249..7571
DNA (1323bp) protein (441aa)
fumarylacetoacetate hydrolase (EC:3.7.1.2)
hypothetical protein Tax=Fischerella muscicola RepID=UPI0002D40931
Fumarylacetoacetase {ECO:0000313|EMBL:KIF22079.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
PLM0_60_b1_sep16_scaffold_882_11
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7594..8094
DNA (501bp) protein (167aa)
Histone-lysine N-methyltransferase, H3 lysine-4 specific Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q092R0_STIAD bin=RBG9 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG9 organism_group=Chloroflexi
SET domain protein {ECO:0000313|EMBL:KFE71918.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
nuclear protein SET
PLM0_60_b1_sep16_scaffold_882_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8647..10686
DNA (2040bp) protein (680aa)
endothelin-converting protein 1 (EC:3.4.24.71)
Endothelin-converting enzyme 1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0D1_OPITP
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM0_60_b1_sep16_scaffold_882_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10806..11219
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9I4_GEMAT
ApaG domain protein
ApaG domain protein {ECO:0000313|EMBL:AHG91235.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_882_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11299..11928
DNA (630bp) protein (210aa)
Kynurenine formamidase {ECO:0000313|EMBL:CDM64258.1}; EC=3.5.1.9 {ECO:0000313|EMBL:CDM64258.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Cyclase family protein Tax=Geobacter sp. (strain M21) RepID=C6E690_GEOSM
cyclase family protein
PLM0_60_b1_sep16_scaffold_882_15
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

11925..12548
DNA (624bp) protein (208aa)
hydrolase Tax=Deinococcus apachensis RepID=UPI00037ABE50
HAD family hydrolase
HAD-superfamily hydrolase subfamily IA, variant 3 {ECO:0000313|EMBL:ABF45962.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
PLM0_60_b1_sep16_scaffold_882_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

12552..13451
DNA (900bp) protein (300aa)
6-phosphogluconate dehydrogenase, decarboxylating Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7X9_SPHTD
6-phosphogluconate dehydrogenase
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000313|EMBL:ACZ39850.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM0_60_b1_sep16_scaffold_882_17
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

13448..15022
DNA (1575bp) protein (525aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase Tax=uncultured Acidobacteria bacterium RepID=H5SG45_9BACT
PLM0_60_b1_sep16_scaffold_882_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15013..17004
DNA (1992bp) protein (664aa)
hypothetical protein
Transglycosylase SLT domain-containing protein bin=GWC2_Methylomirabilis_70_24 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM0_60_b1_sep16_scaffold_882_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16992..17237)
DNA (246bp) protein (82aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90576.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_882_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17447..18019
DNA (573bp) protein (191aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
tRNA(Ile)-lysidine synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=TILS_GEMAT
tRNA(Ile)-lysidine synthase
PLM0_60_b1_sep16_scaffold_882_21
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18016..18585
DNA (570bp) protein (190aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:BAH38434.1}; EC=2.4.2.8 {ECO:0000313|EMBL:BAH38434.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Hypoxanthine phosphoribosyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A874_GEMAT
PLM0_60_b1_sep16_scaffold_882_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18585..19031
DNA (447bp) protein (149aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
peptidase M41 FtsH domain protein
PLM0_60_b1_sep16_scaffold_882_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19219..20481
DNA (1263bp) protein (421aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-dependent zinc metalloprotease FtsH Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A875_GEMAT
peptidase M41 FtsH domain protein
PLM0_60_b1_sep16_scaffold_882_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

20478..21386
DNA (909bp) protein (303aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI0003744FE2
dihydropteroate synthase
PLM0_60_b1_sep16_scaffold_882_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21388..21984)
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFP5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99484.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM0_60_b1_sep16_scaffold_882_26
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22223..23776
DNA (1554bp) protein (518aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A877_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH38437.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_882_27
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23710..25479)
DNA (1770bp) protein (590aa)
Beta-lactamase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UFX2_MYXSD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AGC47866.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM0_60_b1_sep16_scaffold_882_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25686..27188)
DNA (1503bp) protein (501aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Adenosylhomocysteinase
Adenosylhomocysteinase bin=GWA2_Bacteroidetes_40_14 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
PLM0_60_b1_sep16_scaffold_882_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27214..28224)
DNA (1011bp) protein (337aa)
Methyltransferase type 11
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM0_60_b1_sep16_scaffold_882_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

28309..30096
DNA (1788bp) protein (596aa)
hypothetical protein Tax=Spirosoma luteum RepID=UPI00037B67F3
Pyrrolo-quinoline quinone beta-propeller repeat-containing protein
Pyrrolo-quinoline quinone beta-propeller repeat-containing protein {ECO:0000313|EMBL:AHG88769.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying items 1-30 of 34 in total

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