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PLM0_60_b1_sep16_scaffold_2201

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_2201_1
unknown

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1..78
DNA (78bp) protein (26aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_2201_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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83..1465
DNA (1383bp) protein (461aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN7_GEMAT
Beta-Casp domain protein
Beta-Casp domain protein {ECO:0000313|EMBL:AHG89476.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1480..2103
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN6_GEMAT
protein of unknown function DUF218
Uncharacterized protein {ECO:0000313|EMBL:AHG88466.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_4
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2150..2953)
DNA (804bp) protein (268aa)
Phospholipase/carboxylesterase superfamily Tax=uncultured bacterium RepID=K2DTI1_9BACT
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM0_60_b1_sep16_scaffold_2201_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2977..4317
DNA (1341bp) protein (447aa)
Peptidase S16B family protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN4_GEMAT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88453.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4317..5666
DNA (1350bp) protein (450aa)
Putative M16B family peptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN3_GEMAT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88452.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5674..6240
DNA (567bp) protein (189aa)
Putative ADP-ribose pyrophosphatase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN1_GEMAT
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AHG88445.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6482..7120
DNA (639bp) protein (213aa)
RNA polymerase sigma factor Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7187..7723
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88443.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7804..8643
DNA (840bp) protein (280aa)
Putative DNA polymerase III delta subunit Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM8_GEMAT
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit {ECO:0000313|EMBL:AHG88442.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8664..9437
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM7_GEMAT
Sporulation domain-containing protein
Sporulation domain-containing protein {ECO:0000313|EMBL:AHG88441.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9621..12260
DNA (2640bp) protein (880aa)
DNA mismatch repair protein MutS Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM6_GEMAT
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA mismatch repair protein mutS
PLM0_60_b1_sep16_scaffold_2201_13

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12257..12724
DNA (468bp) protein (156aa)
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:AIA18393.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TonB family protein
PLM0_60_b1_sep16_scaffold_2201_14

Not on your lists

12760..14154
DNA (1395bp) protein (465aa)
Cystathionine beta-synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT
Pyridoxal-phosphate dependent enzyme {ECO:0000313|EMBL:AIA18392.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Pyridoxal-5'-phosphate-dependent protein beta subunit
PLM0_60_b1_sep16_scaffold_2201_15

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14173..15171
DNA (999bp) protein (333aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEL0_GEMAT
D-alanine--D-alanine ligase
PLM0_60_b1_sep16_scaffold_2201_16

Not on your lists

15238..16131
DNA (894bp) protein (298aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEK9_GEMAT
Rhomboid family {ECO:0000313|EMBL:AIA16451.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM0_60_b1_sep16_scaffold_2201_17

Not on your lists

16243..16578
DNA (336bp) protein (112aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEK8_GEMAT
NADPH-dependent 7-cyano-7-deazaguanine reductase
PLM0_60_b1_sep16_scaffold_2201_18
unknown

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16642..17265
DNA (624bp) protein (208aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_2201_trna_1
unknown

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17423..17495
DNA (73bp)
transferRNA Phe
PLM0_60_b1_sep16_scaffold_2201_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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17728..18522
DNA (795bp) protein (265aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC51_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89894.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_20

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comp(18555..18815)
DNA (261bp) protein (87aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E2E35
Transferrin receptor-like dimerisation domain protein {ECO:0000313|EMBL:AIA18114.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Transferrin receptor domain protein dimerization region
PLM0_60_b1_sep16_scaffold_2201_21

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comp(18808..20748)
DNA (1941bp) protein (647aa)
Glutamate carboxypeptidase II Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XS4_SOLUE
Transferrin receptor-like dimerisation domain protein {ECO:0000313|EMBL:AIA18407.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Transferrin receptor domain protein dimerization region
PLM0_60_b1_sep16_scaffold_2201_22

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comp(20748..21368)
DNA (621bp) protein (207aa)
HxlR-like helix-turn-helix {ECO:0000313|EMBL:AIA18103.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HxlR family transcriptional regulator bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
HxlR family transcriptional regulator
PLM0_60_b1_sep16_scaffold_2201_23
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21469..22332
DNA (864bp) protein (288aa)
hypothetical protein Tax=Segetibacter koreensis RepID=UPI0003757863
Uncharacterized protein {ECO:0000313|EMBL:EGL15477.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
PLM0_60_b1_sep16_scaffold_2201_24
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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22499..23362
DNA (864bp) protein (288aa)
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM0_60_b1_sep16_scaffold_2201_25
unknown

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comp(23416..23748)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_2201_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23939..24193
DNA (255bp) protein (85aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91714.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_2201_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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24262..26955
DNA (2694bp) protein (898aa)
Putative cyclic beta 1-2 glucan synthetase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE98_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG93687.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Protein of unknown function DUF2329
Displaying 28 items

View Taxonomy