ggKbase home page

B_1_S1_Biohub_coassembly_k141_3894723

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_3894723_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(138..1073)
DNA (936bp) protein (312aa)
UDP-glucuronate 4-epimerase (EC:5.1.3.6)
UDP-glucuronate 4-epimerase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIA3_DESK7
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDM66593.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
B_1_S1_Biohub_coassembly_k141_3894723_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(1070..2203)
DNA (1134bp) protein (378aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Lipid-A-disaccharide synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG23_9BACT
B_1_S1_Biohub_coassembly_k141_3894723_3
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2200..3198)
DNA (999bp) protein (333aa)
Similar to 1-carboxy-3-chloro-3,4-dihydroxycyclohexa-1, 5-diene dehydrogenase Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7H7_9BACT
Similar to 1-carboxy-3-chloro-3,4-dihydroxycyclohexa-1, 5-diene dehydrogenase {ECO:0000313|EMBL:CAJ70783.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
dehydrogenase
B_1_S1_Biohub_coassembly_k141_3894723_4
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(3199..4032)
DNA (834bp) protein (278aa)
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_3894723_5
CG_Omnitr_04, Omnitrophica, Bacteria

Not on your lists

comp(4410..5711)
DNA (1302bp) protein (434aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ bin=GWC2_OP3-like_45_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
beta-hydroxyacyl-(ACP) dehydratase FabZ
Tax=CG_Omnitr_04
B_1_S1_Biohub_coassembly_k141_3894723_6
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(6040..8634)
DNA (2595bp) protein (865aa)
Uncharacterized protein bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
Outer membrane protein
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_3894723_7
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

8945..10162
DNA (1218bp) protein (406aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
tRNA pseudouridine synthase D Tax=uncultured Acidobacteria bacterium RepID=H5SFF4_9BACT
truD; tRNA pseudouridine synthase D
B_1_S1_Biohub_coassembly_k141_3894723_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(10260..10628)
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
B_1_S1_Biohub_coassembly_k141_3894723_9
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(10625..12811)
DNA (2187bp) protein (729aa)
Diguanylate cyclase with PAS/PAC and GAF sensors Tax=Fischerella sp. JSC-11 RepID=G6G0D4_9CYAN
Diguanylate cyclase with PAS/PAC and GAF sensors {ECO:0000313|EMBL:EHC08384.1}; species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
kinase-like protein
B_1_S1_Biohub_coassembly_k141_3894723_10
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(13295..16081)
DNA (2787bp) protein (929aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent bin=GWA2_Ignavibacteria_55_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=GWA2_Ignavibacteria_54_16_curated
B_1_S1_Biohub_coassembly_k141_3894723_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16516..17184
DNA (669bp) protein (223aa)
putative beta-phosphoglucomutase (EC:5.4.2.6)
HAD family hydrolase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
B_1_S1_Biohub_coassembly_k141_3894723_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17194..18060
DNA (867bp) protein (289aa)
hypothetical protein Tax=Mastigocladopsis repens RepID=UPI0002F100F1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
B_1_S1_Biohub_coassembly_k141_3894723_13
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

18070..21417
DNA (3348bp) protein (1116aa)
adenylyl cyclase class-3/4/guanylyl cyclase bin=bin9_gal15 species=Micromonospora lupini genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
adenylate/guanylate cyclase
Tax=RBG_16_Armatimonadetes_67_12_curated
B_1_S1_Biohub_coassembly_k141_3894723_14
unknown

Not on your lists

22060..23229
DNA (1170bp) protein (390aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3894723_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(23250..23762)
DNA (513bp) protein (171aa)
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88)
Tax=CSP1_5_NC10
B_1_S1_Biohub_coassembly_k141_3894723_16
unknown

Not on your lists

comp(23968..25410)
DNA (1443bp) protein (481aa)
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3894723_17
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25465..28485
DNA (3021bp) protein (1007aa)
Adenylate/guanylate cyclase domain-containing protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MR31_CORCM
adenylate/guanylate cyclase domain-containing protein
Adenylate/guanylate cyclase domain-containing protein {ECO:0000313|EMBL:AFE05439.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
B_1_S1_Biohub_coassembly_k141_3894723_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

28493..29719
DNA (1227bp) protein (409aa)
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:CDM67112.1}; EC=2.3.1.179 {ECO:0000313|EMBL:CDM67112.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Beta-ketoacyl synthase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP29_KORVE
beta-ketoacyl synthase
B_1_S1_Biohub_coassembly_k141_3894723_19
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

29719..30408
DNA (690bp) protein (230aa)
hypothetical protein Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00037EDE6C
type 11 methyltransferase
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
B_1_S1_Biohub_coassembly_k141_3894723_20
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30405..31424
DNA (1020bp) protein (340aa)
Uncharacterized protein Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J0F8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC27950.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
putative oxidoreductase
B_1_S1_Biohub_coassembly_k141_3894723_21
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(31506..31628)
DNA (123bp) protein (41aa)
YcfA family protein bin=GWC2_Methylomirabilis_70_16 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
B_1_S1_Biohub_coassembly_k141_3894723_22
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

comp(31724..32011)
DNA (288bp) protein (96aa)
Hypothetical conserved protein bin=GWC2_Methylomirabilis_70_16 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
B_1_S1_Biohub_coassembly_k141_3894723_23
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(32212..34209)
DNA (1998bp) protein (666aa)
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WRF1_9NOST
uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:AFZ22965.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
B_1_S1_Biohub_coassembly_k141_3894723_24
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34209..34769)
DNA (561bp) protein (187aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE10_RHOMR
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
B_1_S1_Biohub_coassembly_k141_3894723_25
unknown

Not on your lists

34918..35427
DNA (510bp) protein (170aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3894723_26
Helicobacter bilis, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

35537..35869
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Helicobacter bilis ATCC 43879 RepID=C3XIW3_9HELI
Uncharacterized protein {ECO:0000313|EMBL:EEO24952.2}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter bilis ATCC 43879.;"
protein tRNA-associated locus protein
B_1_S1_Biohub_coassembly_k141_3894723_27
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36097..36825)
DNA (729bp) protein (243aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
Pseudouridine synthase Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TFD8_HELMI
pseudouridine synthase
B_1_S1_Biohub_coassembly_k141_3894723_28
unknown

Not on your lists

comp(36833..39241)
DNA (2409bp) protein (803aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3894723_29
Desulfovibrio salexigens, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39238..39852)
DNA (615bp) protein (205aa)
Metal dependent phosphohydrolase Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BWB4_DESAD
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ACS78358.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /; VKM B-1763).;"
B_1_S1_Biohub_coassembly_k141_3894723_30

Not on your lists

comp(40020..41264)
DNA (1245bp) protein (415aa)
Marine sediment metagenome DNA, contig: S01H1_L01901 {ECO:0000313|EMBL:GAF85534.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying items 1-30 of 46 in total

View Taxonomy