ggKbase home page

B_1_S1_Biohub_coassembly_k141_4638525

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_4638525_1
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..603)
DNA (603bp) protein (201aa)
Ser/Thr protein kinase (EC:2.7.1.-)
Serine/threonine protein kinase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FVJ5_STIAD
Serine/threonine protein kinase {ECO:0000313|EMBL:EWT05752.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
B_1_S1_Biohub_coassembly_k141_4638525_2
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(941..1243)
DNA (303bp) protein (101aa)
hypothetical protein Tax=beta proteobacterium L13 RepID=UPI00036897AE
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
B_1_S1_Biohub_coassembly_k141_4638525_trna_1
unknown

Not on your lists

1484..1555
DNA (72bp)
transferRNA Asn
B_1_S1_Biohub_coassembly_k141_4638525_3
unknown

Not on your lists

comp(2202..5249)
DNA (3048bp) protein (1016aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_4
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(6714..7067)
DNA (354bp) protein (118aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein bin=GWC2_OP3-like_45_7 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Ferredoxin (fdxA)
Tax=GWA2_WOR_2_47_8_curated
B_1_S1_Biohub_coassembly_k141_4638525_5
unknown

Not on your lists

comp(7180..7794)
DNA (615bp) protein (205aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7977..8486)
DNA (510bp) protein (170aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002E5C774
Putative endonuclease V (Deoxyinosine 3endonuclease) {ECO:0000313|EMBL:EDY17193.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_4638525_7
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

comp(8552..10570)
DNA (2019bp) protein (673aa)
peptidase
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
B_1_S1_Biohub_coassembly_k141_4638525_8

Not on your lists

comp(10830..13919)
DNA (3090bp) protein (1030aa)
Uncharacterized protein {ECO:0000313|EMBL:EKD27091.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
pcu:pc0633 acrD; putative acriflavin resistance protein D; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
acrD; acriflavin resistance protein D
B_1_S1_Biohub_coassembly_k141_4638525_9

Not on your lists

comp(13916..14995)
DNA (1080bp) protein (360aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K1XTV7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD28697.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_4638525_10
Neochlamydia sp. EPS4, Neochlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(15011..16390)
DNA (1380bp) protein (460aa)
Putative outer membrane protein TolC Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDJ0_PARUW
Putative outer membrane protein TolC {ECO:0000313|EMBL:KIC73941.1}; species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Neochlamydia.;" source="Neochlamydia sp. EPS4.;"
tolC; outer membrane protein TolC
B_1_S1_Biohub_coassembly_k141_4638525_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16393..17022)
DNA (630bp) protein (210aa)
transcriptional regulator, TetR family protein Tax=Gemmata obscuriglobus RepID=UPI00016C5095
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA30126.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
B_1_S1_Biohub_coassembly_k141_4638525_12
unknown

Not on your lists

17315..18439
DNA (1125bp) protein (375aa)
Response regulator receiver Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JET2_ANAD2
response regulator receiver
B_1_S1_Biohub_coassembly_k141_4638525_13
unknown

Not on your lists

comp(18441..18854)
DNA (414bp) protein (138aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_14
unknown

Not on your lists

comp(18944..19039)
DNA (96bp) protein (32aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19206..20066
DNA (861bp) protein (287aa)
Methyltransferase type 11 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAA3_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:EDY16564.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
type 11 methyltransferase
B_1_S1_Biohub_coassembly_k141_4638525_16
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20066..20656
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family Tax=Gloeocapsa sp. PCC 7428 RepID=K9XLJ5_9CHRO
Transcriptional regulator {ECO:0000313|EMBL:KIJ80805.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
transcriptional regulator, TetR family
B_1_S1_Biohub_coassembly_k141_4638525_17
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20677..22035)
DNA (1359bp) protein (453aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLL0_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM96449.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
B_1_S1_Biohub_coassembly_k141_4638525_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22032..23894)
DNA (1863bp) protein (621aa)
Heavy metal translocating P-type ATPase Tax=Afipia felis ATCC 53690 RepID=K8NH49_AFIFE
ATPase
Copper-exporting P-type ATPase A {ECO:0000313|EMBL:CEG09206.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
B_1_S1_Biohub_coassembly_k141_4638525_19

Not on your lists

comp(23891..24157)
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Rhodanobacter sp. 115 RepID=I4WMP6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKN50346.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcriptional regulator
B_1_S1_Biohub_coassembly_k141_4638525_20
unknown

Not on your lists

24257..25030
DNA (774bp) protein (258aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25173..25535)
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BDL7_MEISD bin=16ft_combo_ws3_JS1 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
B_1_S1_Biohub_coassembly_k141_4638525_22
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(25547..25927)
DNA (381bp) protein (127aa)
Putative fluoride ion transporter CrcB Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLU2_9BACT
crcB; protein crcB
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
B_1_S1_Biohub_coassembly_k141_4638525_23
unknown

Not on your lists

comp(25924..26778)
DNA (855bp) protein (285aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_4638525_24
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

26933..27673
DNA (741bp) protein (247aa)
tRNA (guanine-N(7)-)-methyltransferase Tax=Gemmata obscuriglobus RepID=UPI00016C56FD
S-adenosylmethionine-dependent methyltransferase
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_4638525_25
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27762..29084
DNA (1323bp) protein (441aa)
Uncharacterized protein Tax=Eimeria maxima RepID=U6M6A1_EIMMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EST19588.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
B_1_S1_Biohub_coassembly_k141_4638525_26
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

29172..29789
DNA (618bp) protein (206aa)
Putative uncharacterized protein bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
protein of unknown function DUF1801
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
B_1_S1_Biohub_coassembly_k141_4638525_27
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(30046..31746)
DNA (1701bp) protein (567aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD03
PBS lyase HEAT domain-containing protein repeat-containing protein
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_4638525_28
Synechococcus sp. PCC 7002, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31856..33430
DNA (1575bp) protein (525aa)
Protein containing von Willebrand factor (VWF) type A domain Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XNC9_SYNP2
von Willebrand factor type A domain-containing protein
Protein containing von Willebrand factor (VWF) type A domain {ECO:0000313|EMBL:ACB00840.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum; quadruplicatum).;"
B_1_S1_Biohub_coassembly_k141_4638525_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

33539..35002
DNA (1464bp) protein (488aa)
Histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBE67554.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Histidine kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJX1_9BACT
Displaying items 1-30 of 57 in total

View Taxonomy